Evidence map›Paper›PMID 25691538›Full record

ArticleCardiovascular research2015

Role of common and rare variants in SCN10A: results from the Brugada syndrome QRS locus gene discovery collaborative study.

Elijah R Behr, Eleonora Savio-Galimberti, Julien Barc, Anders G Holst, Evmorfia Petropoulou, Bram P Prins, Javad Jabbari, Margherita Torchio, Myriam Berthet, Yuka Mizusawa and 23 more

Erratum issuedOpen access · greenAbstract readMulticenter Study
In one paragraph

Article in Cardiovascular research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 106 citations in OpenAlex.

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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 14 institutions in 7 countries.

Elijah R BehrHuman Genetics Research Centre, ICCS, St George's University of London, London SW17 0RE, UK yjamshid@sgul.ac.uk ebehr@sgul.ac.uk.
Eleonora Savio-GalimbertiDivisions of Cardiovascular Medicine and Clinical Pharmacology, Vanderbilt University, Nashville, TN, USA.
Julien BarcDepartment of Clinical and Experimental Cardiology, Academic Medical Center, Amsterdam, Netherlands.
Anders G HolstLaboratory for Molecular Cardiology, The Heart Centre, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark Danish National Research Foundation Centre for Cardiac Arrhythmia, Copenhagen, Denmark Novo Nordisk A/S, Denmark.
Evmorfia PetropoulouHuman Genetics Research Centre, ICCS, St George's University of London, London SW17 0RE, UK.
Bram P PrinsHuman Genetics Research Centre, ICCS, St George's University of London, London SW17 0RE, UK.
Javad JabbariLaboratory for Molecular Cardiology, The Heart Centre, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark Danish National Research Foundation Centre for Cardiac Arrhythmia, Copenhagen, Denmark LEO Pharma A/S, Denmark.
Margherita TorchioIRCCS Istituto Auxologico Italiano, Center for Cardiac Arrhythmias of Genetic Origin, Milan, Italy.
Myriam BerthetInserm, UMR S1166, Faculté de Médecine Pierre et Marie Curie, Paris, France Sorbonne Universités, UPMC Univ Paris 06, UMR S1166, Paris, France Institute of Cardiometabolism & Nutrition, ICAN, Pitié-Salpêtrière Hospital, Paris, France.
Yuka MizusawaDepartment of Clinical and Experimental Cardiology, Academic Medical Center, Amsterdam, Netherlands.
Tao YangDivisions of Cardiovascular Medicine and Clinical Pharmacology, Vanderbilt University, Nashville, TN, USA.
Eline A NannenbergDepartment of Clinical Genetics, Academic Medical Center, Amsterdam.
Federica DagradiIRCCS Istituto Auxologico Italiano, Center for Cardiac Arrhythmias of Genetic Origin, Milan, Italy.
Peter WeekeDivisions of Cardiovascular Medicine and Clinical Pharmacology, Vanderbilt University, Nashville, TN, USA.
Rachel BastiaenanHuman Genetics Research Centre, ICCS, St George's University of London, London SW17 0RE, UK.
Michael J AckermanDivision of Cardiovascular Diseases, Department of Internal Medicine, Mayo Clinic, Rochester, MN, USA Division of Pediatric Cardiology, Department of Pediatrics & Adolescent Medicine, Mayo Clinic, Rochester, MN, USA.
Stig HaunsoLaboratory for Molecular Cardiology, The Heart Centre, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark Danish National Research Foundation Centre for Cardiac Arrhythmia, Copenhagen, Denmark Department of Medicine and Surgery, University of Copenhagen, Copenhagen, Denmark.
Antoine LeenhardtAP-HP, Hôpital Bichat, Service de Cardiologie et Centre de Référence des Maladies Cardiaques Héréditaires, Paris, France.
Stefan KääbInstitute of Human Genetics, Helmholtz Zentrum München, Neuherberg, Germany.
Vincent ProbstInserm, UMR 1087, l'institut du Thorax, Nantes, France CHU Nantes, l'institut du Thorax, Service de Cardiologie, Nantes, France.
Richard RedonInserm, UMR 1087, l'institut du Thorax, Nantes, France CHU Nantes, l'institut du Thorax, Service de Cardiologie, Nantes, France.
Sanjay SharmaHuman Genetics Research Centre, ICCS, St George's University of London, London SW17 0RE, UK.
Arthur WildeDepartment of Clinical and Experimental Cardiology, Academic Medical Center, Amsterdam, Netherlands Princess Al-Jawhara Al-Brahim Centre of Excellence in Research of Hereditary Disorders, Jeddah, Kingdom of Saudi Arabia.
Jacob Tfelt-HansenLaboratory for Molecular Cardiology, The Heart Centre, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark Danish National Research Foundation Centre for Cardiac Arrhythmia, Copenhagen, Denmark Department of Medicine and Surgery, University of Copenhagen, Copenhagen, Denmark.
Peter SchwartzIRCCS Istituto Auxologico Italiano, Center for Cardiac Arrhythmias of Genetic Origin, Milan, Italy.
Dan M RodenDivisions of Cardiovascular Medicine and Clinical Pharmacology, Vanderbilt University, Nashville, TN, USA.
Connie R BezzinaDepartment of Clinical and Experimental Cardiology, Academic Medical Center, Amsterdam, Netherlands.
Morten OlesenLaboratory for Molecular Cardiology, The Heart Centre, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark Danish National Research Foundation Centre for Cardiac Arrhythmia, Copenhagen, Denmark.
Dawood DarbarDivisions of Cardiovascular Medicine and Clinical Pharmacology, Vanderbilt University, Nashville, TN, USA.
Pascale GuicheneyInserm, UMR S1166, Faculté de Médecine Pierre et Marie Curie, Paris, France Sorbonne Universités, UPMC Univ Paris 06, UMR S1166, Paris, France Institute of Cardiometabolism & Nutrition, ICAN, Pitié-Salpêtrière Hospital, Paris, France.
Lia CrottiIRCCS Istituto Auxologico Italiano, Center for Cardiac Arrhythmias of Genetic Origin, Milan, Italy Inserm, UMR 1087, l'institut du Thorax, Nantes, France Department of Molecular Medicine, University of Pavia, Pavia, Italy.
UK10K Consortium
Yalda JamshidiHuman Genetics Research Centre, ICCS, St George's University of London, London SW17 0RE, UK yjamshid@sgul.ac.uk ebehr@sgul.ac.uk.
St George's, University of London · GBAcademic Medical Center · NLVanderbilt University · USUniversity of Copenhagen · DKInstitut du Thorax · FRIRCCS Istituto Auxologico Italiano · ITRigshospitalet · DKAssistance Publique – Hôpitaux de Paris · FRHelmholtz Zentrum München · DEInserm · FRIstituti di Ricovero e Cura a Carattere Scientifico · ITMayo Clinic in Florida · USPitié-Salpêtrière Hospital · FRSorbonne Université · FR

Funding

Pharmacogenomics of Arrhythmia TherapyU19HL065962 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RODEN, DAN M · 2010 to 2014
$17.4M
Positional Cloning and Candidate Gene Approach to Familial Atrial FibrillationR01HL092217 · NHLBI · VANDERBILT UNIVERSITY · PI DARBAR, DAWOOD · 2009 to 2017
$2.9M
British Heart Foundation PG/12/38/29615NHLBI NIH HHS HL092217NHLBI NIH HHS R01 HL092217NHLBI NIH HHS U19 HL65962Wellcome Trust 100140
6 · The paper itself

Abstract

aimsBrugada syndrome (BrS) remains genetically heterogeneous and is associated with slowed cardiac conduction. We aimed to identify genetic variation in BrS cases at loci associated with QRS duration. METHODS AND

resultsA multi-centre study sequenced seven candidate genes (SCN10A, HAND1, PLN, CASQ2, TKT, TBX3, and TBX5) in 156 Caucasian SCN5A mutation-negative BrS patients (80% male; mean age 48) with symptoms (64%) and/or a family history of sudden death (47%) or BrS (18%). Forty-nine variants were identified: 18 were rare (MAF <1%) and non-synonymous; and 11/18 (61.1%), mostly in SCN10A, were predicted as pathogenic using multiple bioinformatics tools. Allele frequencies were compared with the Exome Sequencing and UK10K Projects. SKAT methods tested rare variation in SCN10A finding no statistically significant difference between cases and controls. Co-segregation analysis was possible for four of seven probands carrying a novel pathogenic variant. Only one pedigree (I671V/G1299A in SCN10A) showed co-segregation. The SCN10A SNP V1073 was, however, associated strongly with BrS [66.9 vs. 40.1% (UK10K) OR (95% CI) = 3.02 (2.35-3.87), P = 8.07 × 10-19]. Voltage-clamp experiments for NaV1.8 were performed for SCN10A common variants V1073, A1073, and rare variants of interest: A200V and I671V. V1073, A200V and I671V, demonstrated significant reductions in peak INa compared with ancestral allele A1073 (rs6795970).

conclusionRare variants in the screened QRS-associated genes (including SCN10A) are not responsible for a significant proportion of SCN5A mutation negative BrS. The common SNP SCN10A V1073 was strongly associated with BrS and demonstrated loss of NaV1.8 function, as did rare variants in isolated patients.

Indexed as

Polymorphism, Single NucleotideAction PotentialsAdultAgedBrugada SyndromeCase-Control StudiesCell LineComputational BiologyDatabases, GeneticDNA Mutational AnalysisEuropeFemaleGene FrequencyGenetic Association StudiesGenetic Predisposition to DiseaseHeredityNAV1.8 Voltage-Gated Sodium ChannelSCN10A protein, humanBrugada syndromeGeneticsQRS durationRare variantsSCN10A

Identifiers

PMID25691538
PMCPMC4447806
OpenAlexW2030097304

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.