Evidence map›Paper›PMID 25691407›Full record

ArticleAmerican journal of medical genetics. Part A2015

Expanding the genetic and phenotypic spectrum of popliteal pterygium disorders.

Elizabeth J Leslie, James O'Sullivan, Michael L Cunningham, Ankur Singh, Steven L Goudy, Faroug Ababneh, Lamia Alsubaie, Gaik-Siew Ch'ng, Ingrid M B H van der Laar, A Jeannette M Hoogeboom and 7 more

Open access · greenAbstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Inherited human RelB deficiency impairs innate and adaptive immunity to infection.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Functions of the RIP kinase family members in the skin.Cellular and molecular life sciences : CMLS · 2023
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. IRF6 expression in basal epithelium partially rescues Irf6 knockout mice.Developmental dynamics : an official publication of the American Association of Anatomists · 2017
    Article
  16. Toward an orofacial gene regulatory network.Developmental dynamics : an official publication of the American Association of Anatomists · 2016
    Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 6 countries.

Elizabeth J LeslieDepartment of Pediatrics, University of Iowa, Iowa City, Iowa.
James O'Sullivan
Michael L Cunningham
Ankur Singh
Steven L Goudy
Faroug Ababneh
Lamia Alsubaie
Gaik-Siew Ch'ng
Ingrid M B H van der Laar
A Jeannette M Hoogeboom
Martine Dunnwald
Seema Kapoor
Pawina Jiramongkolchai
Jennifer Standley
J Robert Manak
Jeffrey C Murray
Michael J Dixon
University of Iowa · USErasmus MC · NLKing Abdulaziz Medical City · SAVanderbilt University · USBanaras Hindu University · INHospital Kuala Lumpur · MYManchester Academic Health Science Centre · GBMaulana Azad Medical College · INSeattle Children's Hospital · USUniversity of Manchester · GB

Funding

The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
The internship in Biomedical Research, Informatics, and Computer Science (iBRIC): Biomedical Informatics and Data Science research experiences for students from Minority Serving InstitutionsT15LM007059 · NLM · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HARRY S HOCHHEISER · 1987 to 2026
$23.9M
FaceBase Management and Coordination HubU01DE020057 · NIDCR · UNIVERSITY OF IOWA · PI MARAZITA, MARY L., MURRAY, JEFFREY C · 2009 to 2014
$8.9M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008629 · NIGMS · UNIVERSITY OF IOWA · PI EBERL, DANIEL F · 1997 to 2021
$4.1M
Genomic identification of copy number variants to identify clefting lociR01DE021071 · NIDCR · UNIVERSITY OF IOWA · PI MANAK, JOHN ROBERT · 2010 to 2014
$3.5M
MOLECULAR GENETIC EPIDEMIOLOGY OF CLEFT LIP AND PALATER01DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 1988 to 2003
$1.5M
The Role of IRF6 During Craniofacial DevelopmentK08DE017953 · NIDCR · VANDERBILT UNIVERSITY · PI GOUDY, STEVEN L · 2008 to 2012
$604k
Medical Research Council G0901539Medical Research Council MR/M012174/1NCATS NIH HHS TR000445NCATS NIH HHS UL1 TR000445NIDCR NIH HHS DE017953NIDCR NIH HHS DE021071-01NIDCR NIH HHS DE08559NIDCR NIH HHS DE20057NIDCR NIH HHS K08 DE017953NIDCR NIH HHS R01 DE008559NIDCR NIH HHS R01 DE021071NIDCR NIH HHS R37 DE008559NIDCR NIH HHS U01 DE020057NIGMS NIH HHS T32 GM008629NIGMS NIH HHS T32-GM008629NLM NIH HHS T15 LM007059NLM NIH HHS T15-LM007059Wellcome TrustWellcome Trust 097820
6 · The paper itself

Abstract

The popliteal pterygia syndromes are a distinct subset of the hundreds of Mendelian orofacial clefting syndromes. Popliteal pterygia syndromes have considerable variability in severity and in the associated phenotypic features but are all characterized by cutaneous webbing across one or more major joints, cleft lip and/or palate, syndactyly, and genital malformations. Heterozygous mutations in IRF6 cause popliteal pterygium syndrome (PPS) while homozygous mutations in RIPK4 or CHUK (IKKA) cause the more severe Bartsocas-Papas syndrome (BPS) and Cocoon syndrome, respectively. In this study, we report mutations in six pedigrees with children affected with PPS or BPS. Using a combination of Sanger and exome sequencing, we report the first case of an autosomal recessive popliteal pterygium syndrome caused by homozygous mutation of IRF6 and the first case of uniparental disomy of chromosome 21 leading to a recessive disorder. We also demonstrate that mutations in RIPK4 can cause features with a range of severity along the PPS-BPS spectrum and that mutations in IKKA can cause a range of features along the BPS-Cocoon spectrum. Our findings have clinical implications for genetic counseling of families with pterygia syndromes and further implicate IRF6, RIPK4, and CHUK (IKKA) in potentially interconnected pathways governing epidermal and craniofacial development.

Indexed as

Genetic Association StudiesPhenotypeCleft LipCleft PalateComparative Genomic HybridizationDNA Mutational AnalysisExomeEye AbnormalitiesFemaleFingersGenes, RecessiveGenome-Wide Association StudyHigh-Throughput Nucleotide SequencingHumansI-kappa B KinaseInfantCHUK protein, humanI-kappa B KinaseInterferon Regulatory FactorsIRF6 protein, humanProtein Serine-Threonine KinasesRIPK4 protein, humanexomeorofacial cleftpopliteal pterygiarecessiveuniparental disomy

Identifiers

PMID25691407
PMCPMC4423539
OpenAlexW2046895384

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.