Evidence map›Paper›PMID 25690965›Full record

ArticleThe International journal of developmental biology2014

A conserved set of maternal genes? Insights from a molluscan transcriptome.

M Maureen Liu, John W Davey, Daniel J Jackson, Mark L Blaxter, Angus Davison

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The International journal of developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  6. Review
  7. Evolved Differences inGenetics · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

M Maureen LiuSchool of Life Sciences, University of Nottingham, University Park, Nottingham, UK.
John W Davey
Daniel J Jackson
Mark L Blaxter
Angus Davison
University of Nottingham · GBGTT-Technologies (Germany) · DEUniversity of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F018940/1Biotechnology and Biological Sciences Research Council BB/F021135/1Biotechnology and Biological Sciences Research Council BB/G00661X/1Biotechnology and Biological Sciences Research Council F021135Biotechnology and Biological Sciences Research Council G00661XMedical Research Council G0900740Wellcome Trust 098051
6 · The paper itself

Abstract

The early animal embryo is entirely reliant on maternal gene products for a 'jump-start' that transforms a transcriptionally inactive embryo into a fully functioning zygote. Despite extensive work on model species, it has not been possible to perform a comprehensive comparison of maternally-provisioned transcripts across the Bilateria because of the absence of a suitable dataset from the Lophotrochozoa. As part of an ongoing effort to identify the maternal gene that determines left-right asymmetry in snails, we have generated transcriptome data from 1 to 2-cell and ~32-cell pond snail (Lymnaea stagnalis) embryos. Here, we compare these data to maternal transcript datasets from other bilaterian metazoan groups, including representatives of the Ecydysozoa and Deuterostomia. We found that between 5 and 10% of all L. stagnalis maternal transcripts (~300-400 genes) are also present in the equivalent arthropod (Drosophila melanogaster), nematode (Caenorhabditis elegans), urochordate (Ciona intestinalis) and chordate (Homo sapiens, Mus musculus, Danio rerio) datasets. While the majority of these conserved maternal transcripts ("COMATs") have housekeeping gene functions, they are a non-random subset of all housekeeping genes, with an overrepresentation of functions associated with nucleotide binding, protein degradation and activities associated with the cell cycle. We conclude that a conserved set of maternal transcripts and their associated functions may be a necessary starting point of early development in the Bilateria. For the wider community interested in discovering conservation of gene expression in early bilaterian development, the list of putative COMATs may be useful resource.

Indexed as

AnimalsCaenorhabditis elegansCiona intestinalisDrosophila melanogasterGene Expression ProfilingGene Expression Regulation, DevelopmentalGenes, EssentialHumansInheritance PatternsLymnaeaMiceTranscriptomeZebrafish

Identifiers

PMID25690965
PMCPMC4594767
OpenAlexW2012984422

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.