Evidence map›Paper›PMID 25690894›Full record

ArticleNucleic acids research2015

Single molecule analysis of Trypanosoma brucei DNA replication dynamics.

Simone Guedes Calderano, William C Drosopoulos, Marina Mônaco Quaresma, Catarina A Marques, Settapong Kosiyatrakul, Richard McCulloch, Carl L Schildkraut, Maria Carolina Elias

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  5. Life in plastic, it's fantastic! HowFrontiers in cellular and infection microbiology · 2023
    Review
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  15. FANCM, BRCA1, and BLM cooperatively resolve the replication stress at the ALT telomeres.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Simone Guedes CalderanoLaboratório Especial de Ciclo Celular, Instituto Butantan, São Paulo, SP 05503-900, Brasil Center of Toxins, Immune Response and Cell Signaling - CeTICS, Instituto Butantan, São Paulo, SP 05503-900, Brasil.
William C DrosopoulosDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Marina Mônaco QuaresmaLaboratório Especial de Ciclo Celular, Instituto Butantan, São Paulo, SP 05503-900, Brasil Center of Toxins, Immune Response and Cell Signaling - CeTICS, Instituto Butantan, São Paulo, SP 05503-900, Brasil.
Catarina A MarquesThe Wellcome Trust Centre for Molecular Parasitology, College of Medical, Veterinary and Life Sciences, Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, G128TA, UK.
Settapong KosiyatrakulDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Richard McCullochThe Wellcome Trust Centre for Molecular Parasitology, College of Medical, Veterinary and Life Sciences, Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, G128TA, UK.
Carl L SchildkrautDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA carol@butantan.gov.br.
Maria Carolina EliasLaboratório Especial de Ciclo Celular, Instituto Butantan, São Paulo, SP 05503-900, Brasil Center of Toxins, Immune Response and Cell Signaling - CeTICS, Instituto Butantan, São Paulo, SP 05503-900, Brasil carol@butantan.gov.br.
Albert Einstein College of Medicine · USInstituto Butantan · BRUniversity of Glasgow · GBWellcome Centre for Molecular Parasitology · GB

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
DNA REPLICATION INITIATION SITES IN MAMMALIAN CELLSR01GM045751 · NIGMS · YESHIVA UNIVERSITY · PI SCHILDKRAUT, CARL L · 1992 to 2023
$13.4M
Medical Research Council G0401553NCI NIH HHS P30 CA013330NIGMS NIH HHS 5R01-GM045751NIGMS NIH HHS R01 GM045751Wellcome Trust 083485Wellcome Trust 085349Wellcome Trust 104111
6 · The paper itself

Abstract

Eukaryotic genome duplication relies on origins of replication, distributed over multiple chromosomes, to initiate DNA replication. A recent genome-wide analysis of Trypanosoma brucei, the etiological agent of sleeping sickness, localized its replication origins to the boundaries of multigenic transcription units. To better understand genomic replication in this organism, we examined replication by single molecule analysis of replicated DNA. We determined the average speed of replication forks of procyclic and bloodstream form cells and we found that T. brucei DNA replication rate is similar to rates seen in other eukaryotes. We also analyzed the replication dynamics of a central region of chromosome 1 in procyclic forms. We present evidence for replication terminating within the central part of the chromosome and thus emanating from both sides, suggesting a previously unmapped origin toward the 5' extremity of chromosome 1. Also, termination is not at a fixed location in chromosome 1, but is rather variable. Importantly, we found a replication origin located near an ORC1/CDC6 binding site that is detected after replicative stress induced by hydroxyurea treatment, suggesting it may be a dormant origin activated in response to replicative stress. Collectively, our findings support the existence of more replication origins in T. brucei than previously appreciated.

Indexed as

Cell Cycle ProteinsChromosomesDNA, ProtozoanDNA ReplicationFlow CytometryGenome, ProtozoanHydroxyureaKineticsLife Cycle StagesMolecular BiologyNucleic Acid Synthesis InhibitorsOrigin Recognition ComplexPolymerase Chain ReactionProtozoan ProteinsReplication OriginTime FactorsCell Cycle ProteinsDNA, ProtozoanHydroxyureaNucleic Acid Synthesis InhibitorsOrigin Recognition ComplexProtozoan Proteins

Identifiers

PMID25690894
PMCPMC4357695
OpenAlexW2149931669

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.