Evidence map›Paper›PMID 25690322›Full record

ArticleHepatology (Baltimore, Md.)2015

Induced pluripotent stem cells model personalized variations in liver disease resulting from α1-antitrypsin deficiency.

Edgar N Tafaleng, Souvik Chakraborty, Bing Han, Pamela Hale, Wanquan Wu, Alejandro Soto-Gutierrez, Carol A Feghali-Bostwick, Andrew A Wilson, Darrell N Kotton, Masaki Nagaya and 5 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07639996 (Natural Course and Molecular Basis of Alpha 1- Antitrypsin Deficiency-associated Liver Disease.), which is not on this map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT07639996 not yet recruitingnot on this mapstarted 2026, after this paper: background citation

Natural Course and Molecular Basis of Alpha 1- Antitrypsin Deficiency-associated Liver Disease.

TypeobservationalSponsorAssiut UniversityRan2026 to 2028Enrolled45ConditionsAlpha 1-antitrypsin Deficiency (AATD)ArmsMulti-omic spatial analysis
3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Rationale and Design of the Alpha-1 Biomarkers Consortium Study.Chronic obstructive pulmonary diseases (Miami, Fla.) · 2025
    Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. From Cells to Organs: The Present and Future of Regenerative Medicine.Advances in experimental medicine and biology · 2022
    Review
  15. Review
  16. Synthetic human livers for modeling metabolic diseases.Current opinion in gastroenterology · 2021
    Review
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Edgar N TafalengDepartment of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA.ORCID http://orcid.org/0000-0003-3050-515X
Souvik ChakrabortyChildren's Hospital of Pittsburgh of UPMC, Pittsburgh, PA.
Bing HanDepartment of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA.
Pamela HaleChildren's Hospital of Pittsburgh of UPMC, Pittsburgh, PA.
Wanquan WuDepartment of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA.
Alejandro Soto-GutierrezChildren's Hospital of Pittsburgh of UPMC, Pittsburgh, PA.
Carol A Feghali-BostwickDepartment of Medicine, Medical University of South Carolina, Charleston, SC.
Andrew A WilsonCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA.
Darrell N KottonCenter for Regenerative Medicine (CReM) of Boston University and Boston Medical Center, Boston, MA.
Masaki NagayaDepartment of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA.
Stephen C StromDepartment of Laboratory Medicine, Division of Pathology, Karolinska Institutet, Stockholm, Sweden.
Jayanta Roy-ChowdhuryDepartment of Medicine, Albert Einstein College of Medicine, New York, NY.
Donna B StolzDepartment of Cell Biology, University of Pittsburgh School of Medicine, Pittsburgh.
David H PerlmutterChildren's Hospital of Pittsburgh of UPMC, Pittsburgh, PA.
Ira J FoxDepartment of Surgery, University of Pittsburgh School of Medicine, Pittsburgh, PA.
University of Pittsburgh · USBoston University · USAlbert Einstein College of Medicine · USKarolinska Institutet · SEMedical University of South Carolina · US

Funding

University of Pittsburgh Clinical and Translational Science InstituteUL1TR000005 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2012 to 2015
$50.8M
Special Animal CoreP30DK041296 · NIDDK · YESHIVA UNIVERSITY · PI WOLKOFF, ALLAN W · 1989 to 2018
$22.9M
Treating AT Deficiency with Drugs that Modulate the Proteostasis NetworkP01DK096990 · NIDDK · WASHINGTON UNIVERSITY · PI SILVERMAN, GARY ARTHUR · 2012 to 2023
$18.3M
Signaling Pathways Influencing Liver Disease Phenotype in Antitrypsin DeficiencyR01DK100289 · NIDDK · WASHINGTON UNIVERSITY · PI PERLMUTTER, DAVID H · 2014 to 2017
$1.8M
NCATS NIH HHS UL1 TR000005NIDDK NIH HHS P01 DK096990NIDDK NIH HHS P30 DK041296NIDDK NIH HHS R01 DK100289
6 · The paper itself

Abstract

unlabelledIn the classical form of α1-antitrypsin deficiency (ATD), aberrant intracellular accumulation of misfolded mutant α1-antitrypsin Z (ATZ) in hepatocytes causes hepatic damage by a gain-of-function, "proteotoxic" mechanism. Whereas some ATD patients develop severe liver disease (SLD) that necessitates liver transplantation, others with the same genetic defect completely escape this clinical phenotype. We investigated whether induced pluripotent stem cells (iPSCs) from ATD individuals with or without SLD could model these personalized variations in hepatic disease phenotypes. Patient-specific iPSCs were generated from ATD patients and a control and differentiated into hepatocyte-like cells (iHeps) having many characteristics of hepatocytes. Pulse-chase and endoglycosidase H analysis demonstrate that the iHeps recapitulate the abnormal accumulation and processing of the ATZ molecule, compared to the wild-type AT molecule. Measurements of the fate of intracellular ATZ show a marked delay in the rate of ATZ degradation in iHeps from SLD patients, compared to those from no liver disease patients. Transmission electron microscopy showed dilated rough endoplasmic reticulum in iHeps from all individuals with ATD, not in controls, but globular inclusions that are partially covered with ribosomes were observed only in iHeps from individuals with SLD.

conclusioniHeps model the individual disease phenotypes of ATD patients with more rapid degradation of misfolded ATZ and lack of globular inclusions in cells from patients who have escaped liver disease. The results support the concept that "proteostasis" mechanisms, such as intracellular degradation pathways, play a role in observed variations in clinical phenotype and show that iPSCs can potentially be used to facilitate predictions of disease susceptibility for more precise and timely application of therapeutic strategies.

Indexed as

alpha 1-Antitrypsinalpha 1-Antitrypsin DeficiencyCells, CulturedEndoplasmic Reticulum, RoughHumansInduced Pluripotent Stem CellsLiver Diseasesalpha 1-Antitrypsin

Identifiers

PMID25690322
PMCPMC4482790
OpenAlexW2151575317

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.