Evidence map›Paper›PMID 25689423›Full record

ArticleInternational journal of molecular sciences2015

Functional properties of the catalytic domain of mouse acidic mammalian chitinase expressed in Escherichia coli.

Akinori Kashimura, Masahiro Kimura, Kazuaki Okawa, Hirotaka Suzuki, Atsushi Ukita, Satoshi Wakita, Kana Okazaki, Misa Ohno, Peter O Bauer, Masayoshi Sakaguchi and 2 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  5. Article
  6. Article
  7. Chitins and chitinase activity in airway diseases.The Journal of allergy and clinical immunology · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Akinori KashimuraDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. bd12001@ns.kogakuin.ac.jp.
Masahiro KimuraDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. b411050@ns.kogakuin.ac.jp.
Kazuaki OkawaDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. bd14001@ns.kogakuin.ac.jp.
Hirotaka SuzukiDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. hirotaka.suzuki@ssd.hpk.co.jp.
Atsushi UkitaDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. atsushi.ukita@gmail.com.
Satoshi WakitaDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. bm13028@ns.kogakuin.ac.jp.
Kana OkazakiDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. kanaokazaki@eurofins.com.
Misa OhnoDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. bd13001@ns.kogakuin.ac.jp.
Peter O BauerDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL 32224, USA. Bauer.Peter@mayo.edu.
Masayoshi SakaguchiDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. bt11532@ns.kogakuin.ac.jp.
Yasusato SugaharaDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. bt79310@ns.kogakuin.ac.jp.
Fumitaka OyamaDepartment of Applied Chemistry, Kogakuin University, Hachioji, Tokyo 192-0015, Japan. f-oyama@cc.kogakuin.ac.jp.
Kogakuin University · JPJacksonville College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mouse acidic mammalian chitinase (AMCase) plays important physiological roles in defense and nutrition. AMCase is composed of an N-terminal catalytic domain (CatD) and a C-terminal chitin-binding domain (CBD). We expressed CatD of mouse AMCase as a recombinant fusion protein with Protein A and V5-His in Escherichia coli (Protein A-CatD-V5-His), evaluated its functional properties and compared them to the full-length AMCase (Protein A-AMCase-V5-His). Under our experimental conditions, the chitinolytic activity of both proteins against 4-nitrophenyl N,N'-diacetyl-β-D-chitobioside was equivalent with regard to their specific enzymatic activities, optimal pH and temperature as well as to the pH and temperature stability. CatD bound to chitin beads and cleaved the N-acetylglucosamine hexamer, colloidal and crystalline chitin as well as the shrimp shell, and released primarily N,N'-diacetylchitobiose fragments at pH 2.0. These results indicate that the primary structure of CatD is sufficient to form a proper tertiary structure required for chitinolytic activity, recognize chitin substrates and degrade them in the absence of a CBD. Our recombinant proteins can be used for further studies evaluating pathophysiological roles of AMCase in different diseases.

Indexed as

AnimalsCatalytic DomainChitinChitinasesCloning, MolecularEscherichia coliHydrogen-Ion ConcentrationMiceProtein BindingRecombinant Fusion ProteinsTemperatureAMCase, mouseChitinChitinasesRecombinant Fusion Proteins

Identifiers

PMID25689423
PMCPMC4346942
OpenAlexW2043583435

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.