Evidence map›Paper›PMID 25689027›Full record

ArticleThe ISME journal2015

Expression profiling of the bloom-forming cyanobacterium Nodularia CCY9414 under light and oxidative stress conditions.

Matthias Kopf, Fred Möke, Hermann Bauwe, Wolfgang R Hess, Martin Hagemann

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Acclimation ofFrontiers in microbiology · 2022
    Article
  7. Article
  8. Article
  9. Article
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  16. Article
  17. Regulatory RNAs in photosynthetic cyanobacteria.FEMS microbiology reviews · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Matthias KopfAlbert-Ludwigs-Universität Freiburg, Fakultät für Biologie, Genetik und Experimentelle Bioinformatik, Freiburg, Germany.
Fred MökeUniversität Rostock, Institut für Biowissenschaften, Pflanzenphysiologie, Rostock, Germany.
Hermann BauweUniversität Rostock, Institut für Biowissenschaften, Pflanzenphysiologie, Rostock, Germany.
Wolfgang R HessAlbert-Ludwigs-Universität Freiburg, Fakultät für Biologie, Genetik und Experimentelle Bioinformatik, Freiburg, Germany.
Martin HagemannUniversität Rostock, Institut für Biowissenschaften, Pflanzenphysiologie, Rostock, Germany.
University of Rostock · DEUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Massive blooms of toxic cyanobacteria frequently occur in the central Baltic Sea during the summer. In the surface scum, cyanobacterial cells are exposed to high light (HL) intensity, high oxygen partial pressure and other stresses. To mimic these conditions, cultures of Nodularia spumigena CCY9414, which is a strain isolated from a cyanobacterial summer bloom in the Baltic Sea, were incubated at a HL intensity of 1200 μmol photons m(-2) s(-1) or a combination of HL and increased oxygen partial pressure. Using differential RNA sequencing, we compared the global primary transcriptomes of control and stressed cells. The combination of oxidative and light stresses induced the expression of twofold more genes compared with HL stress alone. In addition to the induction of known stress-responsive genes, such as psbA, ocp and sodB, Nodularia cells activated the expression of genes coding for many previously unknown light- and oxidative stress-related proteins. In addition, the expression of non-protein-coding RNAs was found to be stimulated by these stresses. Among them was an antisense RNA to the phycocyanin-encoding mRNA cpcBAC and the trans-encoded regulator of photosystem I, PsrR1. The large genome capacity allowed Nodularia to harbor more copies of stress-relevant genes such as psbA and small chlorophyll-binding protein genes, combined with the coordinated induction of these and many additional genes for stress acclimation. Our data provide a first insight on how N. spumigena became adapted to conditions relevant for a cyanobacterial bloom in the Baltic Sea.

Indexed as

LightChlorophyllGene Expression ProfilingNodulariaOxidative StressPhotosynthesisRNA, BacterialSeawaterChlorophyllRNA, Bacterial

Identifiers

PMID25689027
PMCPMC4579465
OpenAlexW2028393029

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.