Evidence map›Paper›PMID 25688970›Full record

ArticlePloS one2015

Genomic characterization of novel circular ssDNA viruses from insectivorous bats in Southern Brazil.

Francisco Esmaile de Sales Lima, Samuel Paulo Cibulski, Helton Fernandes Dos Santos, Thais Fumaco Teixeira, Ana Paula Muterle Varela, Paulo Michel Roehe, Eric Delwart, Ana Cláudia Franco

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 42 citations in OpenAlex.

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  8. Highly Sensitive Virome Characterization ofPathogens (Basel, Switzerland) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Francisco Esmaile de Sales LimaVirology Laboratory, Department of Microbiology, Immunology and Parasitology, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul (RS), Brazil.
Samuel Paulo CibulskiVirology Laboratory, Department of Microbiology, Immunology and Parasitology, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul (RS), Brazil; FEPAGRO Animal Health, Institute of Veterinary Research "Desidério Finamor" (IPVDF), Eldorado do Sul, Rio Grande do Sul (RS), Brazil.
Helton Fernandes Dos SantosFEPAGRO Animal Health, Institute of Veterinary Research "Desidério Finamor" (IPVDF), Eldorado do Sul, Rio Grande do Sul (RS), Brazil.
Thais Fumaco TeixeiraFEPAGRO Animal Health, Institute of Veterinary Research "Desidério Finamor" (IPVDF), Eldorado do Sul, Rio Grande do Sul (RS), Brazil.
Ana Paula Muterle VarelaFEPAGRO Animal Health, Institute of Veterinary Research "Desidério Finamor" (IPVDF), Eldorado do Sul, Rio Grande do Sul (RS), Brazil.
Paulo Michel RoeheVirology Laboratory, Department of Microbiology, Immunology and Parasitology, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul (RS), Brazil; FEPAGRO Animal Health, Institute of Veterinary Research "Desidério Finamor" (IPVDF), Eldorado do Sul, Rio Grande do Sul (RS), Brazil.
Eric DelwartBlood Systems Research Institute, San Francisco, California, United States of America; University of California, Department of Laboratory Medicine, San Francisco, California, United States of America.
Ana Cláudia FrancoVirology Laboratory, Department of Microbiology, Immunology and Parasitology, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, Rio Grande do Sul (RS), Brazil.
Universidade Federal do Rio Grande do Sul · BRAnimal Health Institute · USFundação Estadual de Pesquisa Agropecuária · BRBlood Systems Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circoviruses are highly prevalent porcine and avian pathogens. In recent years, novel circular ssDNA genomes have recently been detected in a variety of fecal and environmental samples using deep sequencing approaches. In this study the identification of genomes of novel circoviruses and cycloviruses in feces of insectivorous bats is reported. Pan-reactive primers were used targeting the conserved rep region of circoviruses and cycloviruses to screen DNA bat fecal samples. Using this approach, partial rep sequences were detected which formed five phylogenetic groups distributed among the Circovirus and the recently proposed Cyclovirus genera of the Circoviridae. Further analysis using inverse PCR and Sanger sequencing led to the characterization of four new putative members of the family Circoviridae with genome size ranging from 1,608 to 1,790 nt, two inversely arranged ORFs, and canonical nonamer sequences atop a stem loop.

Indexed as

EatingGenomicsInsectaAnimalsBrazilChiropteraCircoviridaeDNA, Single-StrandedFecesGenetic VariationPhylogenyPolymerase Chain ReactionDNA, Single-Stranded

Identifiers

PMID25688970
PMCPMC4331541
OpenAlexW2165239320

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.