Evidence map›Paper›PMID 25688250›Full record

ArticleFrontiers in plant science2015

The absence of protein Y4yS affects negatively the abundance of T3SS Mesorhizobium loti secretin, RhcC2, in bacterial membranes.

Virginia Mercante, Cecilia M Duarte, Cintia M Sánchez, Andrés Zalguizuri, Gustavo Caetano-Anollés, Viviana C Lepek

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 16 citations in OpenAlex.

  1. Two Rieske Fe/S Proteins and TAT System inFrontiers in plant science · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Virginia MercanteInstituto de Investigaciones Biotecnológicas "Dr. Rodolfo A. Ugalde," Universidad Nacional de San Martín Buenos Aires, Argentina.
Cecilia M DuarteInstituto de Investigaciones Biotecnológicas "Dr. Rodolfo A. Ugalde," Universidad Nacional de San Martín Buenos Aires, Argentina.
Cintia M SánchezInstituto de Investigaciones Biotecnológicas "Dr. Rodolfo A. Ugalde," Universidad Nacional de San Martín Buenos Aires, Argentina.
Andrés ZalguizuriInstituto de Investigaciones Biotecnológicas "Dr. Rodolfo A. Ugalde," Universidad Nacional de San Martín Buenos Aires, Argentina.
Gustavo Caetano-AnollésEvolutionary Bioinformatics Laboratory, Department of Crop Sciences, University of Illinois Urbana-Champaign, USA.
Viviana C LepekInstituto de Investigaciones Biotecnológicas "Dr. Rodolfo A. Ugalde," Universidad Nacional de San Martín Buenos Aires, Argentina.
National University of General San Martín · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mesorhizobium loti MAFF303099 has a functional type III secretion system (T3SS) that is involved in the determination of nodulation competitiveness on Lotus. The M. loti T3SS cluster contains gene y4yS (mlr8765) that codes for a protein of unknown function (Y4yS). A mutation in the y4yS gene favors the M. loti symbiotic competitive ability on Lotus tenuis cv. Esmeralda and affects negatively the secretion of proteins through T3SS. Here we localize Y4yS in the bacterial membrane using a translational reporter peptide fusion. In silico analysis indicated that this protein presents a tetratricopeptide repeat (TPR) domain, a signal peptide and a canonical lipobox LGCC in the N-terminal sequence. These features that are shared with proteins required for the formation of the secretin complex in type IV secretion systems and in the Tad system, together with its localization, suggest that the y4yS-encoded protein is required for the formation of the M. loti T3SS secretin (RhcC2) complex. Remarkably, analysis of RhcC2 in the wild-type and M. loti y4yS mutant strains indicated that the absence of Y4yS affects negatively the accumulation of normal levels of RhcC2 in the membrane.

Indexed as

pilotinrhizobiarhizobiumsecretinsecretion systemsymbiosis

Identifiers

PMID25688250
PMCPMC4311626
OpenAlexW2041057199

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.