Evidence map›Paper›PMID 25688178›Full record

ArticleArchaea (Vancouver, B.C.)2015

Recombinant cyclodextrinase from Thermococcus kodakarensis KOD1: expression, purification, and enzymatic characterization.

Ying Sun, Xiaomin Lv, Zhengqun Li, Jiaqiang Wang, Baolei Jia, Jinliang Liu

Abstract read
In one paragraph

Article in Archaea (Vancouver, B.C.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ying SunCollege of Plant Sciences, Jilin University, Changchun 130062, China.ORCID 0000-0002-2042-6514
Xiaomin LvCollege of Plant Sciences, Jilin University, Changchun 130062, China.
Zhengqun LiCollege of Plant Sciences, Jilin University, Changchun 130062, China.ORCID 0000-0002-6938-0705
Jiaqiang WangCollege of Plant Sciences, Jilin University, Changchun 130062, China.ORCID 0000-0001-9068-8619
Baolei JiaCollege of Plant Sciences, Jilin University, Changchun 130062, China ; Department of Life Science, Chung-Ang University, Seoul 156-756, Republic of Korea.ORCID 0000-0001-6434-5604
Jinliang LiuCollege of Plant Sciences, Jilin University, Changchun 130062, China.ORCID 0000-0001-6605-1271

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A gene encoding a cyclodextrinase from Thermococcus kodakarensis KOD1 (CDase-Tk) was identified and characterized. The gene encodes a protein of 656 amino acid residues with a molecular mass of 76.4 kDa harboring four conserved regions found in all members of the α-amylase family. A recombinant form of the enzyme was purified by ion-exchange chromatography, and its catalytic properties were examined. The enzyme was active in a broad range of pH conditions (pHs 4.0-10.0), with an optimal pH of 7.5 and a temperature optimum of 65°C. The purified enzyme preferred to hydrolyze β-cyclodextrin (CD) but not α- or γ-CD, soluble starch, or pullulan. The final product from β-CD was glucose. The V max and K m values were 3.13 ± 0.47 U mg(-1) and 2.94 ± 0.16 mg mL(-1) for β-CD. The unique characteristics of CDase-Tk with a low catalytic temperature and substrate specificity are discussed, and the starch utilization pathway in a broad range of temperatures is also proposed.

Indexed as

Amino Acid Sequencebeta-CyclodextrinsConserved SequenceEnzyme StabilityGlucoseGlycoside HydrolasesHydrogen-Ion ConcentrationHydrolysisKineticsMolecular Sequence DataMolecular WeightRecombinant ProteinsSequence AlignmentSubstrate SpecificityTemperatureThermococcusbeta-CyclodextrinscyclomaltodextrinaseGlucoseGlycoside HydrolasesRecombinant Proteins

Identifiers

PMID25688178
PMCPMC4321091

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.