Evidence map›Paper›PMID 25687285›Full record

ArticleProtein expression and purification2015

One-pot refolding of core histones from bacterial inclusion bodies allows rapid reconstitution of histone octamer.

Young-Tae Lee, Garrett Gibbons, Shirley Y Lee, Zaneta Nikolovska-Coleska, Yali Dou

Abstract read
In one paragraph

Article in Protein expression and purification, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Young-Tae LeeDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address: lyoungta@med.umich.edu.
Garrett GibbonsDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Shirley Y LeeDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Zaneta Nikolovska-ColeskaDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Yali DouDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA; Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, MI 48109, USA. Electronic address: yalid@med.umich.edu.
University of Michigan–Ann Arbor · US

Funding

Function of MLL in transcription regulationR01GM082856 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DOU, YALI · 2009 to 2023
$4.0M
NIGMS NIH HHS GM082856NIGMS NIH HHS R01 GM082856
6 · The paper itself

Abstract

We report an optimized method to purify and reconstitute histone octamer, which utilizes high expression of histones in inclusion bodies but eliminates the time consuming steps of individual histone purification. In the newly modified protocol, Xenopus laevis H2A, H2B, H3, and H4 are expressed individually into inclusion bodies of bacteria, which are subsequently mixed together and denatured in 8M guanidine hydrochloride. Histones are refolded and reconstituted into soluble octamer by dialysis against 2M NaCl, and metal-affinity purified through an N-terminal polyhistidine-tag added on the H2A. After cleavage of the polyhistidine-tag, histone octamer is further purified by size exclusion chromatography. We show that the nucleosomes reconstituted using the purified histone octamer above are fully functional. They serve as effective substrates for the histone methyltransferases DOT1L and MLL1. Small angle X-ray scattering further confirms that the reconstituted nucleosomes have correct structural integration of histone octamer and DNA as observed in the X-ray crystal structure. Our new protocol enables rapid reconstitution of histone octamer with an optimal yield. We expect this simplified approach to facilitate research using recombinant nucleosomes in vitro.

Indexed as

Amphibian ProteinsAnimalsCell LineCloning, MolecularCrystallography, X-RayEscherichia coliGene ExpressionGuanidineHistone-Lysine N-MethyltransferaseHistonesHumansInclusion BodiesMethyltransferasesModels, MolecularMyeloid-Lymphoid Leukemia ProteinNucleosomesAmphibian ProteinsDOT1L protein, humanGuanidineHistone-Lysine N-MethyltransferaseHistonesKMT2A protein, humanMethyltransferasesMyeloid-Lymphoid Leukemia ProteinNucleosomesRecombinant Fusion ProteinsSodium ChlorideHistone methyltransferaseHistone octamerNucleosomeRefoldingSmall angle X-ray scattering

Identifiers

PMID25687285
PMCPMC4403241
OpenAlexW2023804970

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.