Evidence map›Paper›PMID 25686824›Full record

ArticleOncotarget2015

RACK1 is a candidate gene associated with the prognosis of patients with early stage non-small cell lung cancer.

Yi-Young Choi, Shin Yup Lee, Won Kee Lee, Hyo-Sung Jeon, Eung Bae Lee, Hyun Cheol Lee, Jin Eun Choi, Hyo-Gyoung Kang, Eun Jin Lee, Eun Young Bae and 9 more

Abstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. RACK1 Acts as a Potential Tumor Promoter in Colorectal Cancer.Gastroenterology research and practice · 2019
    Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Yi-Young ChoiDepartments of Biochemistry and Cell Biology, Kyungpook National University, Daegu, Republic of Korea.
Shin Yup LeeInternal Medicine, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.
Won Kee LeeBiostatistics Center, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.
Hyo-Sung JeonDepartments of Biochemistry and Cell Biology, Kyungpook National University, Daegu, Republic of Korea.
Eung Bae LeeLung Cancer Center, Kyungpook National University Medical Center, Daegu, Republic of Korea.
Hyun Cheol LeeDiagnosis and Prediction Biotechnology, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.
Jin Eun ChoiDepartments of Biochemistry and Cell Biology, Kyungpook National University, Daegu, Republic of Korea.
Hyo-Gyoung KangDepartments of Biochemistry and Cell Biology, Kyungpook National University, Daegu, Republic of Korea.
Eun Jin LeeLung Cancer Center, Kyungpook National University Medical Center, Daegu, Republic of Korea.
Eun Young BaeDepartments of Biochemistry and Cell Biology, Kyungpook National University, Daegu, Republic of Korea.
Seung Soo YooInternal Medicine, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.
Jaehee LeeInternal Medicine, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.
Seung Ick ChaInternal Medicine, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.
Chang Ho KimInternal Medicine, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.
In-San KimDepartments of Biochemistry and Cell Biology, Kyungpook National University, Daegu, Republic of Korea.
Myung Hoon LeeDiagnosis and Prediction Biotechnology, School of Medicine, Kyungpook National University, Daegu, Republic of Korea.
Young Tae KimDepartment of Thoracic and Cardiovascular Surgery, Seoul National University School of Medicine, Seoul, Republic of Korea.
Sanghoon JheonDepartment of Thoracic and Cardiovascular Surgery, Seoul National University School of Medicine, Seoul, Republic of Korea.
Jae Yong ParkDepartments of Biochemistry and Cell Biology, Kyungpook National University, Daegu, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThis study was conducted to identify genetic polymorphisms associated with the prognosis of patients with early stage NSCLC. MATERIALS AND

methodsWe genotyped 1,969 potentially functional single nucleotide polymorphisms (SNPs) of 1,151 genes involved in carcinogenesis in 166 NSCLC patients who underwent curative surgery, using the Affymetrix custom-made GeneChip. A replication study was performed in an independent cohort of 626 patients.

resultsFifty six SNPs which were associated with both overall survival (OS) and disease-free survival (DFS) with log-rank P values < 0.05 in discovery set were selected for validation. Among those, five SNPs (RACK1 rs1279736C>A and rs3756585T>G, C3 rs2287845T>C, PCAF rs17006625A>G, and PCM1 rs17691523C>G) were found to be significantly associated with survival in the same direction as the discovery set. In combined analysis, the rs1279736C>A and rs3756585T>G were most significantly associated with OS and DFS in multivariate analysis (P for OS = 4 × 10⁻⁵ and 7 × 10⁻⁵, respectively; and P for DFS = 0.003, both; under codominant model). In vitro promoter assay and electrophoretic mobility shift assay revealed that the rs3756585 T-to-G change increased promoter activity and transcription factor binding of RACK1.

conclusionsWe identified five SNPs, especially RACK1 rs3756585T>G, as markers for prognosis of patients with surgically resected NSCLC.

Indexed as

AdultAgedBiomarkers, TumorCarcinoma, Non-Small-Cell LungDisease-Free SurvivalFemaleGenotypeGTP-Binding ProteinsHumansKaplan-Meier EstimateLung NeoplasmsMaleMiddle AgedNeoplasm ProteinsOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideBiomarkers, TumorGTP-Binding ProteinsNeoplasm ProteinsRACK1 protein, humanReceptors, Cell SurfaceReceptors for Activated C Kinase

Identifiers

PMID25686824
PMCPMC4414203

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.