Evidence map›Paper›PMID 25686603›Full record

ArticleNature2015

Axitinib effectively inhibits BCR-ABL1(T315I) with a distinct binding conformation.

Tea Pemovska, Eric Johnson, Mika Kontro, Gretchen A Repasky, Jeffrey Chen, Peter Wells, Ciarán N Cronin, Michele McTigue, Olli Kallioniemi, Kimmo Porkka and 2 more

Abstract read
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In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 1 synthesis or guideline pooled it.

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53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Tea PemovskaInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, 00290 Helsinki, Finland.
Eric JohnsonLa Jolla Laboratories, Pfizer Worldwide Research &Development, San Diego, California 92121, USA.
Mika KontroHematology Research Unit Helsinki, University of Helsinki, and Helsinki University Hospital Comprehensive Cancer Center, Department of Hematology, 00290 Helsinki, Finland.
Gretchen A RepaskyInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, 00290 Helsinki, Finland.
Jeffrey ChenLa Jolla Laboratories, Pfizer Worldwide Research &Development, San Diego, California 92121, USA.
Peter WellsLa Jolla Laboratories, Pfizer Worldwide Research &Development, San Diego, California 92121, USA.
Ciarán N CroninLa Jolla Laboratories, Pfizer Worldwide Research &Development, San Diego, California 92121, USA.
Michele McTigueLa Jolla Laboratories, Pfizer Worldwide Research &Development, San Diego, California 92121, USA.
Olli KallioniemiInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, 00290 Helsinki, Finland.
Kimmo PorkkaHematology Research Unit Helsinki, University of Helsinki, and Helsinki University Hospital Comprehensive Cancer Center, Department of Hematology, 00290 Helsinki, Finland.
Brion W MurrayLa Jolla Laboratories, Pfizer Worldwide Research &Development, San Diego, California 92121, USA.
Krister WennerbergInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, 00290 Helsinki, Finland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The BCR-ABL1 fusion gene is a driver oncogene in chronic myeloid leukaemia and 30-50% of cases of adult acute lymphoblastic leukaemia. Introduction of ABL1 kinase inhibitors (for example, imatinib) has markedly improved patient survival, but acquired drug resistance remains a challenge. Point mutations in the ABL1 kinase domain weaken inhibitor binding and represent the most common clinical resistance mechanism. The BCR-ABL1 kinase domain gatekeeper mutation Thr315Ile (T315I) confers resistance to all approved ABL1 inhibitors except ponatinib, which has toxicity limitations. Here we combine comprehensive drug sensitivity and resistance profiling of patient cells ex vivo with structural analysis to establish the VEGFR tyrosine kinase inhibitor axitinib as a selective and effective inhibitor for T315I-mutant BCR-ABL1-driven leukaemia. Axitinib potently inhibited BCR-ABL1(T315I), at both biochemical and cellular levels, by binding to the active form of ABL1(T315I) in a mutation-selective binding mode. These findings suggest that the T315I mutation shifts the conformational equilibrium of the kinase in favour of an active (DFG-in) A-loop conformation, which has more optimal binding interactions with axitinib. Treatment of a T315I chronic myeloid leukaemia patient with axitinib resulted in a rapid reduction of T315I-positive cells from bone marrow. Taken together, our findings demonstrate an unexpected opportunity to repurpose axitinib, an anti-angiogenic drug approved for renal cancer, as an inhibitor for ABL1 gatekeeper mutant drug-resistant leukaemia patients. This study shows that wild-type proteins do not always sample the conformations available to disease-relevant mutant proteins and that comprehensive drug testing of patient-derived cells can identify unpredictable, clinically significant drug-repositioning opportunities.

Indexed as

Angiogenesis InhibitorsAxitinibCell LineCell ProliferationCrystallizationCrystallography, X-RayDrug RepositioningDrug Resistance, NeoplasmDrug Screening Assays, AntitumorFusion Proteins, bcr-ablHumansImidazolesIndazolesKidney NeoplasmsLeukemia, Myelogenous, Chronic, BCR-ABL PositiveModels, MolecularAngiogenesis InhibitorsAxitinibBCR-ABL1 fusion protein, humanFusion Proteins, bcr-ablImidazolesIndazolesKDR protein, humanProtein Kinase InhibitorsProto-Oncogene Proteins c-ablVascular Endothelial Growth Factor Receptor-2

Identifiers

PMID25686603

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.