Evidence map›Paper›PMID 25686393›Full record

ArticleJournal of proteome research2015

Monitoring newly synthesized proteins over the adult life span of Caenorhabditis elegans.

Krishna Vukoti, Xiaokun Yu, Quanhu Sheng, Sudipto Saha, Zhaoyang Feng, Ao-Lin Hsu, Masaru Miyagi

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. SETD2 regulates the methylation of translation elongation factor eEF1A1 in clear cell renal cell carcinoma.Kidney cancer journal : official journal of the Kidney Cancer Association · 2022
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  6. α-Defensin HD5 StabilizesPathogens & immunity · 2019
    Article
  7. Review
  8. Changes of Protein Turnover in AgingMolecular & cellular proteomics : MCP · 2017
    Article
  9. Article
  10. Monitoring the synthesis of biomolecules using mass spectrometry.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2016
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Krishna VukotiCenter for Proteomics and Bioinformatics, ‡Department of Pharmacology, and §Department of Ophthalmology and Visual Sciences, Case Western Reserve University , Cleveland, Ohio, United States.
Xiaokun Yu
Quanhu Sheng
Sudipto Saha
Zhaoyang Feng
Ao-Lin Hsu
Masaru Miyagi
Case Western Reserve University · USBose Institute · INUniversity of Michigan–Ann Arbor · USVanderbilt University · US

Funding

Regulation of Heat Shock Transcription Factor in Long-lived AnimalsR01AG028516 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HSU, AO-LIN ALLEN · 2008 to 2017
$2.8M
NIA NIH HHS R01 AG028516
6 · The paper itself

Abstract

Little is known regarding how the synthesis and degradation of individual proteins change during the life of an organism. Such knowledge is vital to understanding the aging process. To fill this knowledge gap, we monitored newly synthesized proteins on a proteome scale in Caenorhabditis elegans over time during adulthood using a stable-isotope labeling by amino acids in cell culture (SILAC)-based label-chase approach. For most proteins, the rate of appearance of newly synthesized protein was high during the first 5 days of adulthood, slowed down between the fifth and the 11th days, and then increased again after the 11th day. However, the magnitude of appearance rate differed significantly from protein to protein. For example, the appearance of newly synthesized protein was fast for proteins involved in embryonic development, transcription regulation, and lipid binding/transport, with >70% of these proteins newly synthesized by day 5 of adulthood, whereas it was slow for proteins involved in cellular assembly and motility, such as actin and myosin, with <70% of these proteins newly synthesized even on day 16. The late-life increase of newly synthesized protein was especially high for ribosomal proteins and ATP synthases. We also investigated the effect of RNAi-mediated knockdown of the rpl-9 (ribosomal protein), atp-3 (ATP synthase), and ril-1 (RNAi-induced longevity-1) genes and found that inhibiting the expression of atp-3 and ril-1 beginning in late adulthood is still effective to extend the life span of C. elegans.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsLongevityCaenorhabditis elegans ProteinsagingATP synthaseCaenorhabditis eleganslife spanprotein turnoverribosomal proteinSILAC

Identifiers

PMID25686393
PMCPMC4440835
OpenAlexW2313099145

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.