Evidence map›Paper›PMID 25686373›Full record

ArticleNature chemical biology2015

Arginine-rhamnosylation as new strategy to activate translation elongation factor P.

Jürgen Lassak, Eva C Keilhauer, Maximilian Fürst, Kristin Wuichet, Julia Gödeke, Agata L Starosta, Jhong-Min Chen, Lotte Søgaard-Andersen, Jürgen Rohr, Daniel N Wilson and 3 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 135 citations in OpenAlex.

  1. Translation factors that keep the ribosome Pro-active.Microbiology and molecular biology reviews : MMBR · 2026
    Review
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  10. Science advances · 2024
    Article
  11. Article
  12. CRISPRi-Mediated Silencing ofJournal of proteome research · 2023
    Article
  13. Article
  14. Elongation factor P modulatesProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Jürgen Lassak1] Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, Munich, Germany. [2] Department of Biology I, Microbiology, Ludwig-Maximilians-Universität München, Martinsried, Germany.
Eva C KeilhauerProteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried, Germany.
Maximilian Fürst1] Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, Munich, Germany. [2] Department of Biology I, Microbiology, Ludwig-Maximilians-Universität München, Martinsried, Germany.
Kristin WuichetMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Julia GödekeInstitute for Molecular Bacteriology, Twincore, Centre for Clinical and Experimental Infection Research, a joint venture of the Helmholtz Centre of Infection Research and the Hannover Medical School, Hannover, Germany.
Agata L Starosta1] Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, Munich, Germany. [2] Gene Center, Department for Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
Jhong-Min ChenDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, Kentucky, USA.
Lotte Søgaard-AndersenMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Jürgen RohrDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, Lexington, Kentucky, USA.
Daniel N Wilson1] Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, Munich, Germany. [2] Gene Center, Department for Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
Susanne Häussler1] Institute for Molecular Bacteriology, Twincore, Centre for Clinical and Experimental Infection Research, a joint venture of the Helmholtz Centre of Infection Research and the Hannover Medical School, Hannover, Germany. [2] Department of Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany.
Matthias MannProteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried, Germany.
Kirsten Jung1] Center for Integrated Protein Science Munich, Ludwig-Maximilians-Universität München, Munich, Germany. [2] Department of Biology I, Microbiology, Ludwig-Maximilians-Universität München, Martinsried, Germany.
Ludwig-Maximilians-Universität München · DECenter for Experimental and Clinical Infection Research · DECenter for Integrated Protein Science Munich · DEMax Planck Institute for Terrestrial Microbiology · DEMax Planck Institute of Biochemistry · DEUniversity of Kentucky · US

Funding

NOVEL AUREOLIC ACID TYPE ANTITUMOR AGENTSR01CA091901 · NCI · UNIVERSITY OF KENTUCKY · PI ROHR, JURGEN T · 2001 to 2017
$3.6M
Exploring Post-Type II PKS Frame ModificationsR01GM105977 · NIGMS · UNIVERSITY OF KENTUCKY · PI ROHR, JURGEN T · 2014 to 2017
$1.1M
NCI NIH HHS CA 091901NCI NIH HHS R01 CA091901NIGMS NIH HHS R01 GM105977
6 · The paper itself

Abstract

Ribosome stalling at polyproline stretches is common and fundamental. In bacteria, translation elongation factor P (EF-P) rescues such stalled ribosomes, but only when it is post-translationally activated. In Escherichia coli, activation of EF-P is achieved by (R)-β-lysinylation and hydroxylation of a conserved lysine. Here we have unveiled a markedly different modification strategy in which a conserved arginine of EF-P is rhamnosylated by a glycosyltransferase (EarP) using dTDP-L-rhamnose as a substrate. This is to our knowledge the first report of N-linked protein glycosylation on arginine in bacteria and the first example in which a glycosylated side chain of a translation elongation factor is essential for function. Arginine-rhamnosylation of EF-P also occurs in clinically relevant bacteria such as Pseudomonas aeruginosa. We demonstrate that the modification is needed to develop pathogenicity, making EarP and dTDP-L-rhamnose-biosynthesizing enzymes ideal targets for antibiotic development.

Indexed as

Amino Acid SequenceArginineBinding SitesCell Line, TumorChromatography, LiquidCrystallography, X-RayEscherichia coliGlycosylationGlycosyltransferasesHumansHydroxylationLysineMarkov ChainsMass SpectrometryModels, MolecularMolecular Sequence DataArgininefactor EF-PGlycosyltransferasesLysinePeptide Elongation FactorsPeptidesRecombinant ProteinsRhamnoseRNA, Messenger

Identifiers

PMID25686373
PMCPMC4451828
OpenAlexW1998185437

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.