Evidence map›Paper›PMID 25686086›Full record

ArticleNature structural & molecular biology2015

Structural basis for bifunctional peptide recognition at human δ-opioid receptor.

Gustavo Fenalti, Nadia A Zatsepin, Cecilia Betti, Patrick Giguere, Gye Won Han, Andrii Ishchenko, Wei Liu, Karel Guillemyn, Haitao Zhang, Daniel James and 26 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed.

  1. Review
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  16. G Protein-Coupled Receptor-Ligand Pose and Functional Class Prediction.International journal of molecular sciences · 2024
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  17. Identification of 1,3,8-Triazaspiro[4.5]Decane-2,4-Dione Derivatives as a NovelThe Journal of pharmacology and experimental therapeutics · 2024
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  18. Indian Shot (Journal of inflammation research · 2024
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  19. Article
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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

36 authors.

Gustavo FenaltiDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
Nadia A ZatsepinDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Cecilia Betti1] Department of Chemistry, Vrije Universiteit Brussel, Brussels, Belgium. [2] Department of Bioengineering Sciences, Vrije Universiteit Brussel, Brussels, Belgium.
Patrick Giguere1] National Institute of Mental Health Psychoactive Drug Screening Program, University of North Carolina Chapel Hill Medical School, Chapel Hill, North Carolina, USA. [2] Department of Pharmacology, University of North Carolina Chapel Hill Medical School, Chapel Hill, North Carolina, USA. [3] Division of Chemical Biology and Medicinal Chemistry, University of North Carolina Chapel Hill Medical School, Chapel Hill, North Carolina, USA.
Gye Won HanDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
Andrii IshchenkoDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
Wei LiuDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
Karel Guillemyn1] Department of Chemistry, Vrije Universiteit Brussel, Brussels, Belgium. [2] Department of Bioengineering Sciences, Vrije Universiteit Brussel, Brussels, Belgium.
Haitao ZhangDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
Daniel JamesDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Dingjie WangDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Uwe WeierstallDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
John C H SpenceDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Sébastien BoutetLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Marc MesserschmidtLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Garth J WilliamsLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California, USA.
Cornelius GatiCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.
Oleksandr M YefanovCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.
Thomas A WhiteCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.
Dominik Oberthuer1] Center for Free Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany. [2] Institute of Biochemistry and Molecular Biology, University of Hamburg, Hamburg, Germany.
Markus Metz1] Center for Free Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany. [2] Department of Physics, University of Hamburg, Hamburg, Germany.
Chun Hong Yoon1] Center for Free Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany. [2] European X-ray Free-Electron Laser Facility (XFEL GmbH), Hamburg, Germany.
Anton BartyCenter for Free Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany.
Henry N Chapman1] Center for Free Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Hamburg, Germany. [2] Department of Physics, University of Hamburg, Hamburg, Germany.
Shibom Basu1] Department of Chemistry and Biochemistry, Arizona State University, Tempe, Arizona, USA. [2] Center for Applied Structural Discovery at the Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Jesse Coe1] Department of Chemistry and Biochemistry, Arizona State University, Tempe, Arizona, USA. [2] Center for Applied Structural Discovery at the Biodesign Institute, Arizona State University, Tempe, Arizona, USA.ORCID 000000025544320X
Chelsie E Conrad1] Department of Chemistry and Biochemistry, Arizona State University, Tempe, Arizona, USA. [2] Center for Applied Structural Discovery at the Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Raimund Fromme1] Department of Chemistry and Biochemistry, Arizona State University, Tempe, Arizona, USA. [2] Center for Applied Structural Discovery at the Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Petra Fromme1] Department of Chemistry and Biochemistry, Arizona State University, Tempe, Arizona, USA. [2] Center for Applied Structural Discovery at the Biodesign Institute, Arizona State University, Tempe, Arizona, USA.
Dirk Tourwé1] Department of Chemistry, Vrije Universiteit Brussel, Brussels, Belgium. [2] Department of Bioengineering Sciences, Vrije Universiteit Brussel, Brussels, Belgium.
Peter W SchillerLaboratory of Chemical Biology and Peptide Research, Clinical Research Institute of Montreal, Montreal, Quebec, Canada.
Bryan L Roth1] National Institute of Mental Health Psychoactive Drug Screening Program, University of North Carolina Chapel Hill Medical School, Chapel Hill, North Carolina, USA. [2] Department of Pharmacology, University of North Carolina Chapel Hill Medical School, Chapel Hill, North Carolina, USA. [3] Division of Chemical Biology and Medicinal Chemistry, University of North Carolina Chapel Hill Medical School, Chapel Hill, North Carolina, USA.
Steven Ballet1] Department of Chemistry, Vrije Universiteit Brussel, Brussels, Belgium. [2] Department of Bioengineering Sciences, Vrije Universiteit Brussel, Brussels, Belgium.
Vsevolod KatritchDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
Raymond C StevensDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.
Vadim CherezovDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, USA.ORCID 0000000252653914

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Project 3U54GM094618 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI STEVENS, RAYMOND C · 2010 to 2014
$17.1M
Screening CoreU19MH082441 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CARON, MARC G., ROTH, BRYAN L. · 2007 to 2016
$15.2M
Structure-Function of Opioid ReceptorsP01DA035764 · NIDA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEREZOV, VADIM, ROTH, BRYAN L. · 2014 to 2018
$7.1M
Center for the Rational Design of Membrane Protein CrystallographyU54GM094599 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2014
$6.8M
Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
Diterpines as Selective Kappa Opioid Receptor AgonistsR01DA017204 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROTH, BRYAN L. · 2003 to 2014
$3.2M
DEVELOPMENT OF RECEPTOR-SPECIFIC OPIOID PEPTIDE ANALOGSR01DA004443 · NIDA · CLINICAL RESEARCH INSTITUTE OF MONTREAL · PI SCHILLER, PETER W · 1987 to 2016
$2.0M
HT structure determination of GPCRs by LCP serial femtosecond nanocrystallographyR01GM108635 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEREZOV, VADIM · 2014 to 2017
$1.5M
Rational discovery of new DOR chemotypes to prevent addiction and overdoseR33DA038858 · NIDA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KATRITCH, VSEVOLOD · 2017 to 2018
$719k
DEVELOPMENT OF RECEPTOR SPECIFIC OPIOID PEPTIDE ANALOGSR37DA004443 · NIDA · CLINICAL RESEARCH INSTITUTE OF MONTREAL · PI SCHILLER, PETER W · 1997 to 2003
$621k
Rational discovery of new DOR chemotypes to prevent addiction and overdoseR21DA038858 · NIDA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KATRITCH, VSEVOLOD · 2015 to 2016
$410k
CIHR MOP-89716NCI NIH HHS Y1-CO-1020NIDA NIH HHS DA-004443NIDA NIH HHS P01 DA035764NIDA NIH HHS R01 DA004443NIDA NIH HHS R01 DA017204NIDA NIH HHS R21 DA038858NIDA NIH HHS R33 DA038858NIDA NIH HHS R37 DA004443NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM095583NIGMS NIH HHS R01 GM108635NIGMS NIH HHS U54 GM094599NIGMS NIH HHS U54 GM094618NIGMS NIH HHS Y1-GM-1104NIMH NIH HHS U19 MH082441
6 · The paper itself

Abstract

Bifunctional μ- and δ-opioid receptor (OR) ligands are potential therapeutic alternatives, with diminished side effects, to alkaloid opiate analgesics. We solved the structure of human δ-OR bound to the bifunctional δ-OR antagonist and μ-OR agonist tetrapeptide H-Dmt-Tic-Phe-Phe-NH2 (DIPP-NH2) by serial femtosecond crystallography, revealing a cis-peptide bond between H-Dmt and Tic. The observed receptor-peptide interactions are critical for understanding of the pharmacological profiles of opioid peptides and for development of improved analgesics.

Indexed as

Binding SitesCrystallography, X-RayHEK293 CellsHumansModels, MolecularOligopeptidesProtein Structure, TertiaryReceptors, Opioid, deltaTetrahydroisoquinolines2',6'-dimethyltyrosyl-1,2,3,4-tetrahydro-3-isoquinolinecarbonyl-phenylalanyl-phenylalaninamideOligopeptidesReceptors, Opioid, deltaTetrahydroisoquinolines

Identifiers

PMID25686086
PMCPMC4351130

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.