Evidence map›Paper›PMID 25685315›Full record

ArticleChemical science2015

Rational Coupled Dynamics Network Manipulation Rescues Disease-Relevant Mutant Cystic Fibrosis Transmembrane Conductance Regulator.

Elizabeth A Proctor, Pradeep Kota, Andrei A Aleksandrov, Lihua He, John R Riordan, Nikolay V Dokholyan

Abstract read
In one paragraph

Article in Chemical science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Allosteric regulation of kinase activity in living cells.bioRxiv : the preprint server for biology · 2023
    Article
  8. Article
  9. Design and engineering of allosteric communications in proteins.Current opinion in structural biology · 2022
    Review
  10. Article
  11. Article
  12. Review
  13. Engineering an Allosteric Control of Protein Function.The journal of physical chemistry. B · 2021
    Review
  14. Article
  15. Article
  16. Integrated Computational Approaches and Tools forAllosteric Drug Discovery.International journal of molecular sciences · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Elizabeth A ProctorCurriculum in Bioinformatics and Computational Biology, University of North Carolina, Chapel Hill, NC 27599, USA ; Program in Molecular and Cellular Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA.
Pradeep KotaProgram in Molecular and Cellular Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA ; Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA.
Andrei A AleksandrovDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA ; Cystic Fibrosis Treatment and Research Center, University of North Carolina, Chapel Hill, NC 27599, USA.
Lihua HeDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA ; Cystic Fibrosis Treatment and Research Center, University of North Carolina, Chapel Hill, NC 27599, USA.
John R RiordanDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA ; Cystic Fibrosis Treatment and Research Center, University of North Carolina, Chapel Hill, NC 27599, USA.
Nikolay V DokholyanCurriculum in Bioinformatics and Computational Biology, University of North Carolina, Chapel Hill, NC 27599, USA ; Program in Molecular and Cellular Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA ; Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA ; Cystic Fibrosis Treatment and Research Center, University of North Carolina, Chapel Hill, NC 27599, USA.

Funding

Purinergic Control of CFTR-ENaC Interactions in Alveolar EpitheliaP01HL110873 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOUCHER, RICHARD CHARLES · 2012 to 2016
$10.7M
MOLECULAR MECHANISMS OF CFTR FUNCTIONR01DK051619 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RIORDAN, JOHN R · 1997 to 2013
$3.0M
Protein Misfolding and AggregationR01GM080742 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOKHOLYAN, NIKOLAY · 2007 to 2015
$2.8M
Identification of drug leads targeting SOD1 dissociation for the treatment of ALSF31AG039266 · NIA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PROCTOR, ELIZABETH A · 2010 to 2013
$91k
NHLBI NIH HHS P01 HL110873NIA NIH HHS F31 AG039266NIDDK NIH HHS R01 DK051619NIGMS NIH HHS R01 GM080742
6 · The paper itself

Abstract

Many cellular functions necessary for life are tightly regulated by protein allosteric conformational change, and correlated dynamics between protein regions has been found to contribute to the function of proteins not previously considered allosteric. The ability to map and control such dynamic coupling would thus create opportunities for the extension of current therapeutic design strategy. Here, we present an approach to determine the networks of residues involved in the transfer of correlated motion across a protein, and apply our approach to rescue disease-causative mutant cystic fibrosis transmembrane regulator (CFTR) ion channels, ΔF508 and ΔI507, which together constitute over 90% of cystic fibrosis cases. We show that these mutations perturb dynamic coupling within the first nucleotide-binding domain (NBD1), and uncover a critical residue that mediates trans-domain coupled dynamics. By rationally designing a mutation to this residue, we improve aberrant dynamics of mutant CFTR as well as enhance surface expression and function of both mutants, demonstrating the rescue of a disease mutation by rational correction of aberrant protein dynamics.

Identifiers

PMID25685315
PMCPMC4324596

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.