Evidence map›Paper›PMID 25685259›Full record

ArticleStandards in genomic sciences2015

Complete genome sequence of Pseudomonas fluorescens strain PICF7, an indigenous root endophyte from olive (Olea europaea L.) and effective biocontrol agent against Verticillium dahliae.

Pedro Manuel Martínez-García, David Ruano-Rosa, Elisabetta Schilirò, Pilar Prieto, Cayo Ramos, Pablo Rodríguez-Palenzuela, Jesús Mercado-Blanco

Abstract read
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Microbiome-Mediated Protection against Pathogens in Woody Plants.International journal of molecular sciences · 2023
    Review
  3. Article
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  6. Article
  7. Review
  8. Article
  9. Article
  10. Assessing the Involvement of Selected Phenotypes ofPlants (Basel, Switzerland) · 2021
    Article
  11. Genome Mining and Evaluation of the Biocontrol Potential ofInternational journal of molecular sciences · 2020
    Article
  12. Review
  13. Review
  14. IndigenousFrontiers in microbiology · 2018
    Article
  15. Genome Comparison ofJournal of genomics · 2017
    Article
  16. Review
  17. Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Pedro Manuel Martínez-GarcíaInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora", Universidad de Málaga - Agencia Estatal Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Área de Genética, Facultad de Ciencias, Málaga, Spain ; Centro de Biotecnología y Genómica de Plantas (UPM- INIA), Campus de Montegancedo 28223, Pozuelo de Alarcón, Madrid, Spain.
David Ruano-RosaDepartmentos de Potección de Cultivos y, Campus 'Alameda del Obispo' s/n, Apartado 4084, 14080 Córdoba, Spain.
Elisabetta SchiliròDepartmentos de Potección de Cultivos y, Campus 'Alameda del Obispo' s/n, Apartado 4084, 14080 Córdoba, Spain.
Pilar PrietoDepartmentos de Mejora Genética Vegetal, Instituto de Agricultura Sostenible (CSIC), Campus 'Alameda del Obispo' s/n, Apartado 4084, 14080 Córdoba, Spain.
Cayo RamosInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora", Universidad de Málaga - Agencia Estatal Consejo Superior de Investigaciones Científicas (IHSM-UMA-CSIC), Área de Genética, Facultad de Ciencias, Málaga, Spain.
Pablo Rodríguez-PalenzuelaCentro de Biotecnología y Genómica de Plantas (UPM- INIA), Campus de Montegancedo 28223, Pozuelo de Alarcón, Madrid, Spain.
Jesús Mercado-BlancoDepartmentos de Potección de Cultivos y, Campus 'Alameda del Obispo' s/n, Apartado 4084, 14080 Córdoba, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas fluorescens strain PICF7 is a native endophyte of olive roots. Previous studies have shown this motile, Gram-negative, non-sporulating bacterium is an effective biocontrol agent against the soil-borne fungus Verticillium dahliae, the causal agent of one of the most devastating diseases for olive (Olea europaea L.) cultivation. Here, we announce and describe the complete genome sequence of Pseudomonas fluorescens strain PICF7 consisting of a circular chromosome of 6,136,735 bp that encodes 5,567 protein-coding genes and 88 RNA-only encoding genes. Genome analysis revealed genes predicting factors such as secretion systems, siderophores, detoxifying compounds or volatile components. Further analysis of the genome sequence of PICF7 will help in gaining insights into biocontrol and endophytism.

Indexed as

BiocontrolDetoxification systemsEndophyteOlivePseudomonas fluorescensSiderophoresVerticillium wilt

Identifiers

PMID25685259
PMCPMC4322347

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.