Evidence map›Paper›PMID 25684575›Full record

ArticleStructure (London, England : 1993)2015

Allosteric effects of the oncogenic RasQ61L mutant on Raf-RBD.

Susan K Fetics, Hugo Guterres, Bradley M Kearney, Greg Buhrman, Buyong Ma, Ruth Nussinov, Carla Mattos

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed, 248 citations in OpenAlex.

  1. Article
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  10. Structural Dynamics of Rho GTPases.Journal of molecular biology · 2025
    Review
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  16. Article
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  19. Deciphering the pathogenic role of rareFrontiers in genetics · 2024
    Article
  20. Article

88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Susan K FeticsDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115, USA; Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA.
Hugo GuterresDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115, USA.
Bradley M KearneyDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115, USA; Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA.
Greg BuhrmanDepartment of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA.
Buyong MaBasic Science Program, Leidos Biomedical Research, Inc., Cancer and Inflammation Program, National Cancer Institute, Frederick, MD 21702, USA.
Ruth NussinovBasic Science Program, Leidos Biomedical Research, Inc., Cancer and Inflammation Program, National Cancer Institute, Frederick, MD 21702, USA; Department of Human Genetics, Sackler Institute of Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel.
Carla MattosDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, MA 02115, USA; Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA. Electronic address: c.mattos@neu.edu.
Northeastern University · USLeidos (United States) · USNorth Carolina State University · US

Funding

Protein Structure, Stability, and Amyloid FormationZIABC010440 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NUSSINOV, RUTH · 2009 to 2025
$11.8M
Biomolecular Recognition and Binding MechanismsZIABC010441 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NUSSINOV, RUTH · 2009 to 2025
$9.4M
Method Development: Efficient Computer Vision Based AlgorithmsZ01BC010442 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NUSSINOV, RUTH · 2002 to 2008
$454k
Mechanism of intrinsic hydrolysis in Ras and the effect of Raf on oncogenic mutanR56CA096867 · NCI · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI MATTOS, CARLA · 2009 to 2009
$207k
CCR NIH HHS HHSN261200800001CIntramural NIH HHS Z01 BC010442Intramural NIH HHS ZIA BC010441NCI NIH HHS CA086967NCI NIH HHS HHSN261200800001ENCI NIH HHS R56 CA096867
6 · The paper itself

Abstract

The Ras/Raf/MEK/ERK signal transduction pathway is a major regulator of cell proliferation activated by Ras-guanosine triphosphate (GTP). The oncogenic mutant RasQ61L is not able to hydrolyze GTP in the presence of Raf and thus is a constitutive activator of this mitogenic pathway. The Ras/Raf interaction is essential for the activation of the Raf kinase domain through a currently unknown mechanism. We present the crystal structures of the Ras-GppNHp/Raf-RBD and RasQ61L-GppNHp/Raf-RBD complexes, which, in combination with MD simulations, reveal differences in allosteric interactions leading from the Ras/Raf interface to the Ras calcium-binding site and to the remote Raf-RBD loop L4. In the presence of Raf, the RasQ61L mutant has a rigid switch II relative to the wild-type and increased flexibility at the interface with switch I, which propagates across Raf-RBD. We show that in addition to local perturbations on Ras, RasQ61L has substantial long-range effects on the Ras allosteric lobe and on Raf-RBD.

Indexed as

Allosteric RegulationCatalytic DomainCrystallography, X-RayHumansHydrogen BondingMolecular Dynamics SimulationMutation, MissenseProtein BindingProtein Interaction Domains and MotifsProtein Structure, QuaternaryProtein Structure, SecondaryProto-Oncogene Proteins c-rafProto-Oncogene Proteins p21(ras)HRAS protein, humanProto-Oncogene Proteins c-rafProto-Oncogene Proteins p21(ras)

Identifiers

PMID25684575
PMCPMC7755167
OpenAlexW1987365716

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.