Evidence map›Paper›PMID 25684186›Full record

ArticleBiochemical and biophysical research communications2015

Isoaspartate, carbamoyl phosphate synthase-1, and carbonic anhydrase-III as biomarkers of liver injury.

Wayne G Carter, Vasanthy Vigneswara, Anna Newlaczyl, Declan Wayne, Bilal Ahmed, Stephen Saddington, Charlotte Brewer, Nikhilesh Raut, Henry K Gerdes, Amaia M Erdozain and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Carbonic anhydrases as disease markers.Expert opinion on therapeutic patents · 2019
    Review
  6. Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 3 countries.

Wayne G CarterSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK. Electronic address: wayne.carter@nottingham.ac.uk.
Vasanthy VigneswaraSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK.
Anna NewlaczylSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK.
Declan WayneSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK.
Bilal AhmedSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK.
Stephen SaddingtonSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK.
Charlotte BrewerSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK.
Nikhilesh RautSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK.
Henry K GerdesSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK.
Amaia M ErdozainSchool of Medicine, University of Nottingham, Royal Derby Hospital Centre, Derby, DE22 3DT, UK; Department of Pharmacology, University of the Basque Country, and Centro de Investigación Biomédica en Red de Salud Mental, Spain.
David ToothSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, Nottingham, UK.
Edward L BoltSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, Nottingham, UK.
Natalie A OsnaResearch Service, Veterans Affairs Nebraska-Western Iowa Health Care System, Omaha, NE, USA; Department of Internal Medicine, University of Nebraska Medical Center, Omaha, NE, USA; Department of Biochemistry, University of Nebraska Medical Center, Omaha, NE, USA.
Dean J TumaResearch Service, Veterans Affairs Nebraska-Western Iowa Health Care System, Omaha, NE, USA; Department of Internal Medicine, University of Nebraska Medical Center, Omaha, NE, USA; Department of Biochemistry, University of Nebraska Medical Center, Omaha, NE, USA.
Kusum K KharbandaResearch Service, Veterans Affairs Nebraska-Western Iowa Health Care System, Omaha, NE, USA; Department of Internal Medicine, University of Nebraska Medical Center, Omaha, NE, USA; Department of Biochemistry, University of Nebraska Medical Center, Omaha, NE, USA.
University of Nottingham · GBNebraska Medical Center · US

Funding

Accumulation of Isoaspartyl Residue-Bearing Proteins and Alcoholic Liver DiseaseR21AA017296 · NIAAA · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI KHARBANDA, KUSUM K. · 2008 to 2009
$328k
Effect of Alcohol on Hepatic Creatine Biosynthesis: Role of Defective MethylationI01BX001155 · VA · OMAHA VA MEDICAL CENTER · PI KHARBANDA, KUSUM K. · 2012 to 2015
–
Ethanol-Induced Hypomethylation Accelerates Hepatitis C ProgressionI01BX001673 · VA · OMAHA VA MEDICAL CENTER · PI OSNA, NATALIA ALEKSANDR · 2013 to 2016
–
BLRD VA I01 BX001155BLRD VA I01 BX001673NIAAA NIH HHS R21 AA017296NIAAA NIH HHS R21 AA017296-A1Wellcome Trust
6 · The paper itself

Abstract

We had previously shown that alcohol consumption can induce cellular isoaspartate protein damage via an impairment of the activity of protein isoaspartyl methyltransferase (PIMT), an enzyme that triggers repair of isoaspartate protein damage. To further investigate the mechanism of isoaspartate accumulation, hepatocytes cultured from control or 4-week ethanol-fed rats were incubated in vitro with tubercidin or adenosine. Both these agents, known to elevate intracellular S-adenosylhomocysteine levels, increased cellular isoaspartate damage over that recorded following ethanol consumption in vivo. Increased isoaspartate damage was attenuated by treatment with betaine. To characterize isoaspartate-damaged proteins that accumulate after ethanol administration, rat liver cytosolic proteins were methylated using exogenous PIMT and (3)H-S-adenosylmethionine and proteins resolved by gel electrophoresis. Three major protein bands of ∼ 75-80 kDa, ∼ 95-100 kDa, and ∼ 155-160 kDa were identified by autoradiography. Column chromatography used to enrich isoaspartate-damaged proteins indicated that damaged proteins from ethanol-fed rats were similar to those that accrued in the livers of PIMT knockout (KO) mice. Carbamoyl phosphate synthase-1 (CPS-1) was partially purified and identified as the ∼ 160 kDa protein target of PIMT in ethanol-fed rats and in PIMT KO mice. Analysis of the liver proteome of 4-week ethanol-fed rats and PIMT KO mice demonstrated elevated cytosolic CPS-1 and betaine homocysteine S-methyltransferase-1 when compared to their respective controls, and a significant reduction of carbonic anhydrase-III (CA-III) evident only in ethanol-fed rats. Ethanol feeding of rats for 8 weeks resulted in a larger (∼ 2.3-fold) increase in CPS-1 levels compared to 4-week ethanol feeding indicating that CPS-1 accumulation correlated with the duration of ethanol consumption. Collectively, our results suggest that elevated isoaspartate and CPS-1, and reduced CA-III levels could serve as biomarkers of hepatocellular injury.

Indexed as

AnimalsBiomarkersCarbamoyl-Phosphate Synthase (Ammonia)Carbonic Anhydrase IIICells, CulturedChemical and Drug Induced Liver InjuryEthanolIsoaspartic AcidLiverMaleMiceMice, KnockoutProtein D-Aspartate-L-Isoaspartate MethyltransferaseRatsRats, WistarS-AdenosylhomocysteineBiomarkersCarbamoyl-Phosphate Synthase (Ammonia)Carbonic Anhydrase IIIEthanolIsoaspartic AcidProtein D-Aspartate-L-Isoaspartate MethyltransferaseS-AdenosylhomocysteineAlcohol-induced liver injuryCarbamoyl phosphate synthase-1Carbonic anhydrase-IIIIsoaspartateLiver proteomeProtein isoaspartyl methyltransferase

Identifiers

PMID25684186
PMCPMC4355035
OpenAlexW2054474509

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.