Evidence map›Paper›PMID 25683717›Full record

ArticleCell reports2015

The Dnmt3L ADD Domain Controls Cytosine Methylation Establishment during Spermatogenesis.

Georgios Vlachogiannis, Chad E Niederhuth, Salih Tuna, Athanasia Stathopoulou, Keijo Viiri, Dirk G de Rooij, Richard G Jenner, Robert J Schmitz, Steen K T Ooi

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 49 citations in OpenAlex.

  1. The role of epigenetics in cancer: From pathways to the clinic.Journal of family medicine and primary care · 2025
    Review
  2. Review
  3. Epigenetics of nonobstructive azoospermia.Asian journal of andrology · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Genetic Studies on Mammalian DNA Methyltransferases.Advances in experimental medicine and biology · 2022
    Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. DNA methylation in spermatogenesis and male infertility.Experimental and therapeutic medicine · 2016
    Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Georgios VlachogiannisEpigenetic Signaling Group, Department of Cancer Biology, UCL Cancer Institute, Paul O'Gorman Building, 72 Huntley Street, London WC1E 6BT, UK.
Chad E NiederhuthDepartment of Genetics, University of Georgia, 120 East Green Street, Athens, GA 30602, USA.
Salih TunaEpigenetic Signaling Group, Department of Cancer Biology, UCL Cancer Institute, Paul O'Gorman Building, 72 Huntley Street, London WC1E 6BT, UK.
Athanasia StathopoulouEpigenetic Signaling Group, Department of Cancer Biology, UCL Cancer Institute, Paul O'Gorman Building, 72 Huntley Street, London WC1E 6BT, UK.
Keijo ViiriEpigenetic Signaling Group, Department of Cancer Biology, UCL Cancer Institute, Paul O'Gorman Building, 72 Huntley Street, London WC1E 6BT, UK.
Dirk G de RooijCenter for Reproductive Medicine, Academic Medical Center, University of Amsterdam, 1105 AZ Amsterdam, the Netherlands.
Richard G JennerEpigenetic Signaling Group, Department of Cancer Biology, UCL Cancer Institute, Paul O'Gorman Building, 72 Huntley Street, London WC1E 6BT, UK.
Robert J SchmitzDepartment of Genetics, University of Georgia, 120 East Green Street, Athens, GA 30602, USA.
Steen K T OoiEpigenetic Signaling Group, Department of Cancer Biology, UCL Cancer Institute, Paul O'Gorman Building, 72 Huntley Street, London WC1E 6BT, UK. Electronic address: s.ooi@ucl.ac.uk.
CRUK Lung Cancer Centre of Excellence · GBUniversity College London · GBUniversity of Georgia · USUniversity of Amsterdam · NL

Funding

Identification and Characterization of Population-Wide Epigenetic VariationR00GM100000 · NIGMS · UNIVERSITY OF GEORGIA · PI SCHMITZ, ROBERT J. · 2013 to 2015
$723k
Biotechnology and Biological Sciences Research Council BB/H022546/1European Research Council 311704NIGMS NIH HHS R00 GM100000
6 · The paper itself

Abstract

A critical aspect of mammalian gametogenesis is the reprogramming of genomic DNA methylation. The catalytically inactive adaptor Dnmt3L is essential to ensuring this occurs correctly, but the mechanism by which it functions is unclear. Using gene targeting to engineer a single-amino-acid mutation, we show that the Dnmt3L histone H3 binding domain (ADD) is necessary for spermatogenesis. Genome-wide single-base-resolution DNA methylome analysis of mutant germ cells revealed overall reductions in CG methylation at repetitive sequences and non-promoter CpG islands. Strikingly, we also observe an even more severe loss of non-CG methylation, suggesting an unexpected role for the ADD in this process. These epigenetic deficiencies were coupled with defects in spermatogonia, with mutant cells displaying marked changes in gene expression and reactivation of retrotransposons. Our results demonstrate that the Dnmt3L ADD is necessary for Dnmt3L function and full reproductive fitness.

Identifiers

PMID25683717
PMCPMC4534369
OpenAlexW2012326447

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.