Evidence map›Paper›PMID 25683120›Full record

ArticleAmerican journal of human genetics2015

De novo mutations in NALCN cause a syndrome characterized by congenital contractures of the limbs and face, hypotonia, and developmental delay.

Jessica X Chong, Margaret J McMillin, Kathryn M Shively, Anita E Beck, Colby T Marvin, Jose R Armenteros, Kati J Buckingham, Naomi T Nkinsi, Evan A Boyle, Margaret N Berry and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 157 citations in OpenAlex.

  1. Article
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  4. Review
  5. Strabismus in Genetic Syndromes: A Review.Clinical & experimental ophthalmology · 2025
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  8. Unplugging lateral fenestrations of NALCN reveals a hidden drug binding site within the pore region.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. The NaeLife · 2024
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  13. The NabioRxiv : the preprint server for biology · 2023
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  14. Rare variants inHGG advances · 2023
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  15. Article
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  17. Review
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  19. Review
  20. Awareness about Patterson syndrome among dental students.Journal of advanced pharmaceutical technology & research · 2022
    Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 19 institutions in 7 countries.

Jessica X ChongDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Margaret J McMillinDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Kathryn M ShivelyDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Anita E BeckDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Colby T MarvinDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Jose R ArmenterosDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Kati J BuckinghamDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Naomi T NkinsiDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Evan A BoyleDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Margaret N BerryDepartment of Pediatrics, Section on Medical Genetics, Wake Forest School of Medicine, Winston-Salem, NC 27157, USA.
Maureen BocianDivision of Genetic and Genomic Medicine, Department of Pediatrics, University of California Irvine, Orange, CA 92868 USA.
Nicola FouldsWessex Clinical Genetics Services, University Hospital Southampton NHS Foundation Trust, Southampton SO16 5YA, UK; Faculty of Medicine, University of Southampton, Southampton SO16 5YA, UK.
Maria Luisa Giovannucci UzielliGenetics and Molecular Medicine, Dipartimento di Scienz, University of Florence, 6 Viale G. Pieraccini, 50139 Florence, Italy.
Chad Haldeman-EnglertDepartment of Pediatrics, Section on Medical Genetics, Wake Forest School of Medicine, Winston-Salem, NC 27157, USA.
Raoul C M HennekamDepartment of Pediatrics, Academic Medical Center, University of Amsterdam, 1100 DD Amsterdam, the Netherlands.
Paige KaplanDivision of Medical Genetics, Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Antonie D KlineDepartment of Pediatrics, Harvey Institute for Human Genetics, Greater Baltimore Medical Center, Baltimore, MD 21204, USA.
Catherine L MercerWessex Clinical Genetics Services, University Hospital Southampton NHS Foundation Trust, Southampton SO16 5YA, UK; Faculty of Medicine, University of Southampton, Southampton SO16 5YA, UK.
Malgorzata J M NowaczykDepartment of Pediatrics, McMaster University, Hamilton, ON L8S 4L8, Canada; Department of Pathology and Molecular Medicine, McMaster University, Hamilton, ON L8S 4L8, Canada.
Jolien S Klein Wassink-RuiterDepartment of Genetics, University Medical Centre Groningen, 9700 RB, Groningen, the Netherlands.
Elizabeth W McPhersonDepartment of Medical Genetics, Marshfield Clinic, Marshfield, WI 54449, USA.
Regina A MorenoDepartamento de Ciencias Básicas, Facultad de Medicina, Universidad de la Frontera, Temuco 4811230, Chile.
Angela E ScheuerleDepartment of Pediatrics, Division of Genetics and Metabolism, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Vandana ShashiDepartment of Pediatrics, Division of Medical Genetics, Duke University Medical Center, Durham, NC 27710, USA.
Cathy A StevensDepartment of Pediatrics, University of Tennessee College of Medicine, Chattanooga, TN 37403, USA.
John C CareyDepartment of Pediatrics, University of Utah, Salt Lake City, UT 84108, USA.
Arnaud MonteilInstitut de Génomique Fonctionelle, LabEx "Ion Channel Science and Therapeutics," Centre National de la Recherche Scientifique UMR 5203, Montpelier F-34094, France; Département de Physiologie, Université Montpellier, Montpellier F34094, France; Institut National de la Santé et de la Recherche Médicale, Paris, France.
Philippe LoryInstitut de Génomique Fonctionelle, LabEx "Ion Channel Science and Therapeutics," Centre National de la Recherche Scientifique UMR 5203, Montpelier F-34094, France; Département de Physiologie, Université Montpellier, Montpellier F34094, France; Institut National de la Santé et de la Recherche Médicale, Paris, France.
Holly K TaborDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA; Treuman Katz Center for Pediatric Bioethics, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Joshua D SmithDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Jay ShendureDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
University of Washington Center for Mendelian Genomics
Michael J BamshadDepartment of Pediatrics, University of Washington, Seattle, WA 98195, USA; Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA. Electronic address: mbamshad@uw.edu.
University of Washington · USInserm · FRSeattle Children's Hospital · USUniversity Hospital Southampton NHS Foundation Trust · GBWake Forest University · USAmsterdam UMC Location University of Amsterdam · NLChildren's Hospital of Philadelphia · USDuke Medical Center · USGreater Baltimore Medical Center · USMarshfield Clinic · USMcMaster University · CASeattle Children's Hospital · USThe University of Texas Southwestern Medical Center · USUniversidad de La Frontera · CLUniversity Medical Center Groningen · NLUniversity of California, Irvine · USUniversity of Florence · ITUniversity of Tennessee at Chattanooga · USUniversity of Utah · US

Funding

UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Genetic and Molecular Basis of Congenital ContracturesR01HD048895 · NICHD · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH · 2005 to 2016
$4.3M
Next Generation Mendelian GeneticsRC2HG005608 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2009 to 2010
$3.9M
Diversity Action Plan: UW GenOM ProjectR25HG007153 · NHGRI · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2013 to 2020
$2.3M
Ethical and Social Issues in the Study of Genetics of Complex TraitsR00HG004316 · NHGRI · SEATTLE CHILDREN'S HOSPITAL · PI TABOR, HOLLY K · 2008 to 2010
$722k
Identifying the Genetic and Molecular Basis of ClubfootK23HD057331 · NICHD · UNIVERSITY OF WASHINGTON · PI BECK, ANITA E · 2009 to 2013
$636k
Ethical and Social Issues in the Study of Genetics of Complex TraitsK99HG004316 · NHGRI · STANFORD UNIVERSITY · PI TABOR, HOLLY K · 2007 to 2007
$85k
NHGRI NIH HHS 1RC2HG005608NHGRI NIH HHS 1U54HG006493NHGRI NIH HHS 5R000HG004316NHGRI NIH HHS R00 HG004316NHGRI NIH HHS R25 HG007153NHGRI NIH HHS RC2 HG005608NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NICHD NIH HHS 1R01HD048895NICHD NIH HHS 5K23HD057331NICHD NIH HHS K23 HD057331NICHD NIH HHS R01 HD048895
6 · The paper itself

Abstract

Freeman-Sheldon syndrome, or distal arthrogryposis type 2A (DA2A), is an autosomal-dominant condition caused by mutations in MYH3 and characterized by multiple congenital contractures of the face and limbs and normal cognitive development. We identified a subset of five individuals who had been putatively diagnosed with "DA2A with severe neurological abnormalities" and for whom congenital contractures of the limbs and face, hypotonia, and global developmental delay had resulted in early death in three cases; this is a unique condition that we now refer to as CLIFAHDD syndrome. Exome sequencing identified missense mutations in the sodium leak channel, non-selective (NALCN) in four families affected by CLIFAHDD syndrome. We used molecular-inversion probes to screen for NALCN in a cohort of 202 distal arthrogryposis (DA)-affected individuals as well as concurrent exome sequencing of six other DA-affected individuals, thus revealing NALCN mutations in ten additional families with "atypical" forms of DA. All 14 mutations were missense variants predicted to alter amino acid residues in or near the S5 and S6 pore-forming segments of NALCN, highlighting the functional importance of these segments. In vitro functional studies demonstrated that NALCN alterations nearly abolished the expression of wild-type NALCN, suggesting that alterations that cause CLIFAHDD syndrome have a dominant-negative effect. In contrast, homozygosity for mutations in other regions of NALCN has been reported in three families affected by an autosomal-recessive condition characterized mainly by hypotonia and severe intellectual disability. Accordingly, mutations in NALCN can cause either a recessive or dominant condition characterized by varied though overlapping phenotypic features, perhaps based on the type of mutation and affected protein domain(s).

Indexed as

ArthrogryposisContractureCraniofacial DysostosisCytoskeletal ProteinsExomeExtremitiesFaceFemaleGene FrequencyHigh-Throughput Nucleotide SequencingHomozygoteHumansInfantIon ChannelsMaleMembrane ProteinsCytoskeletal ProteinsIon ChannelsMembrane ProteinsMYH3 polypeptide, humanNALCN protein, humanSodium Channels

Identifiers

PMID25683120
PMCPMC4375444
OpenAlexW1987217465

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.