Evidence map›Paper›PMID 25681444›Full record

ArticleThe Journal of biological chemistry2015

Crystal structure of the Rad3/XPD regulatory domain of Ssl1/p44.

Jin Seok Kim, Charlotte Saint-André, Hye Seong Lim, Cheol-Sang Hwang, Jean Marc Egly, Yunje Cho

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jin Seok KimFrom the Department of Life Science, Pohang University of Science and Technology, Pohang 790-784, South Korea and.
Charlotte Saint-Andréthe Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/UdS, BP163, 67404 Illkirch Cedex, C.U. Strasbourg, France.
Hye Seong LimFrom the Department of Life Science, Pohang University of Science and Technology, Pohang 790-784, South Korea and.
Cheol-Sang HwangFrom the Department of Life Science, Pohang University of Science and Technology, Pohang 790-784, South Korea and.
Jean Marc Eglythe Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/UdS, BP163, 67404 Illkirch Cedex, C.U. Strasbourg, France jean-marc.egly@igbmc.fr.
Yunje ChoFrom the Department of Life Science, Pohang University of Science and Technology, Pohang 790-784, South Korea and yunje@postech.ac.kr.
Pohang University of Science and Technology · KRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ssl1/p44 subunit is a core component of the yeast/mammalian general transcription factor TFIIH, which is involved in transcription and DNA repair. Ssl1/p44 binds to and stimulates the Rad3/XPD helicase activity of TFIIH. To understand the helicase stimulatory mechanism of Ssl1/p44, we determined the crystal structure of the N-terminal regulatory domain of Ssl1 from Saccharomyces cerevisiae. Ssl1 forms a von Willebrand factor A fold in which a central six-stranded β-sheet is sandwiched between three α helices on both sides. Structural and biochemical analyses of Ssl1/p44 revealed that the β4-α5 loop, which is frequently found at the interface between von Willebrand factor A family proteins and cellular counterparts, is critical for the stimulation of Rad3/XPD. Yeast genetics analyses showed that double mutation of Leu-239 and Ser-240 in the β4-α5 loop of Ssl1 leads to lethality of a yeast strain, demonstrating the importance of the Rad3-Ssl1 interactions to cell viability. Here, we provide a structural model for the Rad3/XPD-Ssl1/p44 complex and insights into how the binding of Ssl1/p44 contributes to the helicase activity of Rad3/XPD and cell viability.

Indexed as

Amino Acid SequenceCrystallography, X-RayDNA HelicasesModels, MolecularMolecular Sequence DataMutation, MissenseProtein BindingProtein Interaction Domains and MotifsProtein Structure, SecondarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factor TFIIHDNA HelicasesRad3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSSL1 protein, S cerevisiaeTranscription Factor TFIIHCrystal StructureDNA RepairNucleotide Excision RepairRad3/XPD HelicaseRegulatory Domain of Ssl1/p44TFIIHTranscriptionYeast Genetics

Identifiers

PMID25681444
PMCPMC4375486
OpenAlexW2145359063

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.