Evidence map›Paper›PMID 25679475›Full record

ArticleComputers in biology and medicine2015

Quasi-supervised scoring of human sleep in polysomnograms using augmented input variables.

Farid Yaghouby, Sridhar Sunderam

Abstract read
In one paragraph

Article in Computers in biology and medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Farid YaghoubyDepartment of Biomedical Engineering, University of Kentucky, Lexington, KY 40506-0108, USA.
Sridhar SunderamDepartment of Biomedical Engineering, University of Kentucky, Lexington, KY 40506-0108, USA. Electronic address: ssu223@uky.edu.

Funding

SYSTEM FOR AUTOMATED NONINVASIVE MONITORING OF MOUSE SLEEP AND BEHAVIORR44NS083218 · NINDS · SIGNAL SOLUTIONS, LLC · PI LHAMON, MICHAEL E, SUNDERAM, SRIDHAR · 2015 to 2016
$995k
SYSTEM FOR AUTOMATED NONINVASIVE MONITORING OF MOUSE SLEEP AND BEHAVIORR43NS083218 · NINDS · SIGNAL SOLUTIONS, LLC · PI O'HARA, BRUCE F, SUNDERAM, SRIDHAR · 2013 to 2014
$343k
Towards a Behavioral Index of Seizure SusceptibilityR03NS065451 · NINDS · UNIVERSITY OF KENTUCKY · PI SUNDERAM, SRIDHAR · 2009 to 2010
$148k
NINDS NIH HHS NS083218NINDS NIH HHS R03 NS065451NINDS NIH HHS R43 NS083218NINDS NIH HHS R44 NS083218
6 · The paper itself

Abstract

The limitations of manual sleep scoring make computerized methods highly desirable. Scoring errors can arise from human rater uncertainty or inter-rater variability. Sleep scoring algorithms either come as supervised classifiers that need scored samples of each state to be trained, or as unsupervised classifiers that use heuristics or structural clues in unscored data to define states. We propose a quasi-supervised classifier that models observations in an unsupervised manner but mimics a human rater wherever training scores are available. EEG, EMG, and EOG features were extracted in 30s epochs from human-scored polysomnograms recorded from 42 healthy human subjects (18-79 years) and archived in an anonymized, publicly accessible database. Hypnograms were modified so that: 1. Some states are scored but not others; 2. Samples of all states are scored but not for transitional epochs; and 3. Two raters with 67% agreement are simulated. A framework for quasi-supervised classification was devised in which unsupervised statistical models-specifically Gaussian mixtures and hidden Markov models--are estimated from unlabeled training data, but the training samples are augmented with variables whose values depend on available scores. Classifiers were fitted to signal features incorporating partial scores, and used to predict scores for complete recordings. Performance was assessed using Cohen's Κ statistic. The quasi-supervised classifier performed significantly better than an unsupervised model and sometimes as well as a completely supervised model despite receiving only partial scores. The quasi-supervised algorithm addresses the need for classifiers that mimic scoring patterns of human raters while compensating for their limitations.

Indexed as

Signal Processing, Computer-AssistedAdolescentAdultAgedAlgorithmsElectroencephalographyFemaleHumansMaleMiddle AgedModels, StatisticalPolysomnographySleepYoung AdultAutomatic sleep scoringEEGGaussian mixtureHidden Markov modelPSGQuasi-supervisedSupervisedUnsupervised

Identifiers

PMID25679475
PMCPMC4447106

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.