Evidence map›Paper›PMID 25678709›Full record

ArticleThe Journal of biological chemistry2015

Structural analysis of a specialized type III secretion system peptidoglycan-cleaving enzyme.

Brianne J Burkinshaw, Wanyin Deng, Emilie Lameignère, Gregory A Wasney, Haizhong Zhu, Liam J Worrall, B Brett Finlay, Natalie C J Strynadka

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Measure of Peptidoglycan Degradation Activity.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Interplay between Peptidoglycan Biology and Virulence in Gram-Negative Pathogens.Microbiology and molecular biology reviews : MMBR · 2018
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Lytic transglycosylases: concinnity in concision of the bacterial cell wall.Critical reviews in biochemistry and molecular biology · 2017
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Brianne J BurkinshawFrom the Department of Biochemistry and Molecular Biology and the Center for Blood Research.
Wanyin Dengthe Michael Smith Laboratories, and.
Emilie LameignèreFrom the Department of Biochemistry and Molecular Biology and the Center for Blood Research.
Gregory A WasneyFrom the Department of Biochemistry and Molecular Biology and the Center for Blood Research.
Haizhong ZhuFrom the Department of Biochemistry and Molecular Biology and the Center for Blood Research.
Liam J WorrallFrom the Department of Biochemistry and Molecular Biology and the Center for Blood Research.
B Brett FinlayFrom the Department of Biochemistry and Molecular Biology and the Center for Blood Research, the Michael Smith Laboratories, and the Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada.
Natalie C J StrynadkaFrom the Department of Biochemistry and Molecular Biology and the Center for Blood Research, ncjs@mail.ubc.ca.
Canadian Blood Services · CACanada's Michael Smith Genome Sciences Centre · CAUniversity of British Columbia · CA

Funding

Canadian Institutes of Health ResearchHoward Hughes Medical Institute
6 · The paper itself

Abstract

The Gram-negative bacterium enteropathogenic Escherichia coli uses a syringe-like type III secretion system (T3SS) to inject virulence or "effector" proteins into the cytoplasm of host intestinal epithelial cells. To assemble, the T3SS must traverse both bacterial membranes, as well as the peptidoglycan layer. Peptidoglycan is made of repeating N-acetylmuramic acid and N-acetylglucosamine disaccharides cross-linked by pentapeptides to form a tight mesh barrier. Assembly of many macromolecular machines requires a dedicated peptidoglycan lytic enzyme (PG-lytic enzyme) to locally clear peptidoglycan. Here we have solved the first structure of a T3SS-associated PG-lytic enzyme, EtgA from enteropathogenic E. coli. Unexpectedly, the active site of EtgA has features in common with both lytic transglycosylases and hen egg white lysozyme. Most notably, the β-hairpin region resembles that of lysozyme and contains an aspartate that aligns with lysozyme Asp-52 (a residue critical for catalysis), a conservation not observed in other previously characterized lytic transglycosylase families to which the conserved T3SS enzymes had been presumed to belong. Mutation of the EtgA catalytic glutamate, Glu-42, conserved across lytic transglycosylases and hen egg white lysozyme, and this differentiating aspartate diminishes type III secretion in vivo, supporting its essential role in clearing the peptidoglycan for T3SS assembly. Finally, we show that EtgA forms a 1:1 complex with the building block of the polymerized T3SS inner rod component, EscI, and that this interaction enhances PG-lytic activity of EtgA in vitro, collectively providing the necessary strict localization and regulation of the lytic activity to prevent overall cell lysis.

Indexed as

Gene Expression Regulation, BacterialAmino Acid SequenceBacterial Secretion SystemsBiological TransportCell MembraneCell WallEnteropathogenic Escherichia coliEscherichia coli ProteinsGlutamic AcidGlycosyltransferasesModels, MolecularMolecular Sequence DataMuramidaseMutationPeptidoglycanProtein Structure, SecondaryBacterial Secretion SystemsEscherichia coli ProteinsEscI protein, E coliGlutamic AcidGlycosyltransferaseshen egg lysozymeMuramidasePeptidoglycanRecombinant ProteinsBacterial PathogenesisCell WallPeptidoglycanType III Secretion System (T3SS)X-ray Crystallography

Identifiers

PMID25678709
PMCPMC4400350
OpenAlexW2098986505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.