Evidence map›Paper›PMID 25677497›Full record

ArticleJournal of clinical immunology2015

Nijmegen breakage syndrome detected by newborn screening for T cell receptor excision circles (TRECs).

Jay P Patel, Jennifer M Puck, Rajgopal Srinivasan, Christina Brown, Uma Sunderam, Kunal Kundu, Steven E Brenner, Richard A Gatti, Joseph A Church

Open access · hybridAbstract readCase Reports
In one paragraph

Article in Journal of clinical immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. SCID newborn screening: What we've learned.The Journal of allergy and clinical immunology · 2021
    Review
  5. Article
  6. Review
  7. Article
  8. Chromosome instability syndromes.Nature reviews. Disease primers · 2019
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Jay P PatelDivision of General Pediatrics, Children's Hospital of Los Angeles, Los Angeles, CA, USA, jpatel@chla.usc.edu.
Jennifer M Puck
Rajgopal Srinivasan
Christina Brown
Uma Sunderam
Kunal Kundu
Steven E Brenner
Richard A Gatti
Joseph A Church
Tata Consultancy Services (India) · INChildren's Hospital of Los Angeles · USUniversity of California, Berkeley · USUniversity of California, Los Angeles · USUniversity of California, San Francisco · USUniversity of California System · US

Funding

Newborn Screening for T-Cell Disorders: Spectrum and OutcomesR01AI105776 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BRENNER, STEVEN E, CHURCH, JOSEPH · 2013 to 2016
$2.4M
Inherited Disorders of Lymphocyte DevelopmentR01AI078248 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PUCK, JENNIFER M. · 2010 to 2014
$1.9M
NIAID NIH HHS R01 AI078248NIAID NIH HHS R01 AI105776
6 · The paper itself

Abstract

purposeSevere combined immunodeficiency (SCID) encompasses a group of disorders characterized by reduced or absent T-cell number and function and identified by newborn screening utilizing T-cell receptor excision circles (TRECs). This screening has also identified infants with T lymphopenia who lack mutations in typical SCID genes. We report an infant with low TRECs and non-SCID T lymphopenia, who proved upon whole exome sequencing to have Nijmegen breakage syndrome (NBS).

methodsExome sequencing of DNA from the infant and his parents was performed. Genomic analysis revealed deleterious variants in the NBN gene. Confirmatory testing included Sanger sequencing and immunoblotting and radiosensitivity testing of patient lymphocytes.

resultsTwo novel nonsense mutations in NBN were identified in genomic DNA from the family. Immunoblotting showed absence of nibrin protein. A colony survival assay demonstrated radiosensitivity comparable to patients with ataxia telangiectasia.

conclusionsAlthough TREC screening was developed to identify newborns with SCID, it has also identified T lymphopenic disorders that may not otherwise be diagnosed until later in life. Timely identification of an infant with T lymphopenia allowed for prompt pursuit of underlying etiology, making possible a diagnosis of NBS, genetic counseling, and early intervention to minimize complications.

Indexed as

Neonatal ScreeningCell Cycle ProteinsDNA, CircularExomeGene Rearrangement, T-LymphocyteHigh-Throughput Nucleotide SequencingHumansInfantInfant, NewbornMaleNijmegen Breakage SyndromeNuclear ProteinsReceptors, Antigen, T-CellT-LymphocytesCell Cycle ProteinsDNA, CircularNBN protein, humanNuclear ProteinsReceptors, Antigen, T-Cell

Identifiers

PMID25677497
PMCPMC4352190
OpenAlexW1970709551

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.