Evidence map›Paper›PMID 25676762›Full record

ArticleGenome announcements2015

Complete Genome Sequence of a Novel GV.2 Sapovirus Strain, NGY-1, Detected from a Suspected Foodborne Gastroenteritis Outbreak.

Shinichiro Shibata, Tsuyoshi Sekizuka, Akari Kodaira, Makoto Kuroda, Kei Haga, Yen Hai Doan, Reiko Takai-Todaka, Kazuhiko Katayama, Takaji Wakita, Tomoichiro Oka and 1 more

Abstract read
In one paragraph

Article in Genome announcements, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  10. Investigation of a food-borne outbreak of gastroenteritis in a school canteen revealed a variant of sapovirus genogroup V not detected by standard PCR, Sollentuna, Sweden, 2016.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Shinichiro ShibataMicrobiology Department, Nagoya City Public Health Research Institute, Aichi, Japan sshibata-ncphri@umin.ac.jp oka-t@nih.go.jp.
Tsuyoshi SekizukaPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan.
Akari KodairaMicrobiology Department, Nagoya City Public Health Research Institute, Aichi, Japan.
Makoto KurodaPathogen Genomics Center, National Institute of Infectious Diseases, Tokyo, Japan.
Kei HagaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Yen Hai DoanDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Reiko Takai-TodakaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Kazuhiko KatayamaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Takaji WakitaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Tomoichiro OkaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan sshibata-ncphri@umin.ac.jp oka-t@nih.go.jp.
Hiroyuki HirataNagoya City Public Health Research Institute, Aichi, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sapoviruses, members of the family Caliciviridae, are genetically highly diverse. We report here the first complete genome sequence of a genogroup V genotype 2 sapovirus strain, NGY-1, detected from fecal samples of a suspected foodborne gastroenteritis outbreak, determined using a metagenomic sequencing approach.

Identifiers

PMID25676762
PMCPMC4333662

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.