Evidence map›Paper›PMID 25675838›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2015

Inducible nitric oxide synthase (iNOS) regulatory region variation in non-human primates.

Morteza Roodgar, Cody T Ross, Nicholas J Kenyon, Gretchen Marcelino, David Glenn Smith

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In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Morteza RoodgarGraduate Group of Comparative Pathology, School of Veterinary Medicine, University of California, Davis, United States; Molecular Anthropology Laboratory, Department of Anthropology, University of California, Davis, United States; California National Primate Research Center (CNPRC), University of California, Davis, United States. Electronic address: mroodgar@ucdavis.edu.
Cody T RossMolecular Anthropology Laboratory, Department of Anthropology, University of California, Davis, United States; Santa Fe Institute, Santa Fe, NM, United States. Electronic address: ctross@ucdavis.edu.
Nicholas J KenyonDepartment of Internal Medicine, Division of Pulmonary and Critical Care, School of Medicine, University of California, Davis, United States.
Gretchen MarcelinoMolecular Anthropology Laboratory, Department of Anthropology, University of California, Davis, United States.
David Glenn SmithGraduate Group of Comparative Pathology, School of Veterinary Medicine, University of California, Davis, United States; Molecular Anthropology Laboratory, Department of Anthropology, University of California, Davis, United States; California National Primate Research Center (CNPRC), University of California, Davis, United States.
University of California, Davis · US

Funding

UC Davis Clinical and Translational Science CenterUL1TR000002 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BERGLUND, LARS F · 2012 to 2015
$12.2M
GENETIC MANAGEMENT OF MECAQUES BY DNA RFLP ANALYSISR24RR005090 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI SMITH, DAVID GLENN · 1988 to 2011
$3.7M
L-arginine as a therapy in severe asthmaR01HL105573 · NHLBI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KENYON, NICHOLAS J. · 2012 to 2016
$1.9M
Development, Management and Use of a SNP Map for Rhesus MacaqueR24RR025871 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SMITH, DAVID GLENN · 2009 to 2011
$1.6M
NCATS NIH HHS TR000002NCATS NIH HHS UL1 TR000002NCRR NIH HHS R24 RR005090NCRR NIH HHS R24 RR025871NCRR NIH HHS R24RR025871NCRR NIH HHS R24RR05090NHLBI NIH HHS HL105573NHLBI NIH HHS R01 HL105573
6 · The paper itself

Abstract

Inducible nitric oxide synthase (iNOS) is an enzyme that plays a key role in intracellular immune response against respiratory infections. Since various species of nonhuman primates exhibit different levels of susceptibility to infectious respiratory diseases, and since variation in regulatory regions of genes is thought to play a key role in expression levels of genes, two candidate regulatory regions of iNOS were mapped, sequenced, and compared across five species of nonhuman primates: African green monkeys (Chlorocebus sabaeus), pig-tailed macaques (Macaca nemestrina), cynomolgus macaques (Macaca fascicularis), Indian rhesus macaques (Macaca mulatta), and Chinese rhesus macaques (M. mulatta). In addition, we conducted an in silico analysis of the transcription factor binding sites associated with genetic variation in these two candidate regulatory regions across species. We found that only one of the two candidate regions showed strong evidence of involvement in iNOS regulation. Specifically, we found evidence of 13 conserved binding site candidates linked to iNOS regulation: AP-1, C/EBPB, CREB, GATA-1, GATA-3, NF-AT, NF-AT5, NF-κB, KLF4, Oct-1, PEA3, SMAD3, and TCF11. Additionally, we found evidence of interspecies variation in binding sites for several regulatory elements linked to iNOS (GATA-3, GATA-4, KLF6, SRF, STAT-1, STAT-3, OLF-1 and HIF-1) across species, especially in African green monkeys relative to other species. Given the key role of iNOS in respiratory immune response, the findings of this study might help guide the direction of future studies aimed to uncover the molecular mechanisms underlying the increased susceptibility of African green monkeys to several viral and bacterial respiratory infections.

Indexed as

Genetic VariationRegulatory Sequences, Nucleic AcidAnimalsBinding SitesCluster AnalysisComputational BiologyKruppel-Like Factor 4Macaca mulattaNitric Oxide Synthase Type IIPromoter Regions, GeneticSequence AlignmentSequence Analysis, DNATranscription FactorsKLF4 protein, humanKruppel-Like Factor 4Nitric Oxide Synthase Type IITranscription FactorsImmune responseiNOSNon-human primatesRegulatory region

Identifiers

PMID25675838
PMCPMC4361290
OpenAlexW2033384167

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.