Evidence map›Paper›PMID 25674812›Full record

ArticleAnalytical chemistry2015

Metabolomics beyond spectroscopic databases: a combined MS/NMR strategy for the rapid identification of new metabolites in complex mixtures.

Kerem Bingol, Lei Bruschweiler-Li, Cao Yu, Arpad Somogyi, Fengli Zhang, Rafael Brüschweiler

Abstract read
In one paragraph

Article in Analytical chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

  1. Trial
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Plant Metabolomics: The Future of Anticancer Drug Discovery.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  8. Article
  9. Multiplatform untargeted metabolomics.Magnetic resonance in chemistry : MRC · 2023
    Review
  10. Review
  11. Article
  12. Article
  13. Quality Consistency of Herbal Products: Chemical Evaluation.Progress in the chemistry of organic natural products · 2023
    Article
  14. Metabolomics in Cell Biology.Handbook of experimental pharmacology · 2023
    Article
  15. Article
  16. Article
  17. Multi-Omics Strategies for Investigating the Microbiome in Toxicology Research.Toxicological sciences : an official journal of the Society of Toxicology · 2022
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kerem Bingol
Lei Bruschweiler-Li
Cao Yu
Arpad Somogyi
Fengli Zhang§National High Magnetic Field Laboratory, Florida State University, Tallahassee, Florida 32310, United States.
Rafael Brüschweiler

Funding

New hybrid methods for the improved and integrated analysis of complex metabolomics mixturesR01GM066041 · NIGMS · OHIO STATE UNIVERSITY · PI BRUSCHWEILER, RAFAEL · 2002 to 2019
$3.3M
NIGMS NIH HHS R01 GM 066041NIGMS NIH HHS R01 GM066041
6 · The paper itself

Abstract

A novel strategy is introduced that combines high-resolution mass spectrometry (MS) with NMR for the identification of unknown components in complex metabolite mixtures encountered in metabolomics. The approach first identifies the chemical formulas of the mixture components from accurate masses by MS and then generates all feasible structures (structural manifold) that are consistent with these chemical formulas. Next, NMR spectra of each member of the structural manifold are predicted and compared with the experimental NMR spectra in order to identify the molecular structures that match the information obtained from both the MS and NMR techniques. This combined MS/NMR approach was applied to Escherichia coli extract, where the approach correctly identified a wide range of different types of metabolites, including amino acids, nucleic acids, polyamines, nucleosides, and carbohydrate conjugates. This makes this approach, which is termed SUMMIT MS/NMR, well suited for high-throughput applications for the discovery of new metabolites in biological and biomedical mixtures, overcoming the need of experimental MS and NMR metabolite databases.

Indexed as

Databases, FactualMetabolomicsAmino AcidsCarbohydratesEscherichia coliMagnetic Resonance SpectroscopyMass SpectrometryNucleic AcidsPolyaminesAmino AcidsCarbohydratesNucleic AcidsPolyamines

Identifiers

PMID25674812
PMCPMC5035699

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.