Evidence map›Paper›PMID 25671569›Full record

ArticlePloS one2015

Transcriptional activity in diplotene larch microsporocytes, with emphasis on the diffuse stage.

Agnieszka Kołowerzo-Lubnau, Janusz Niedojadło, Michał Świdziński, Elżbieta Bednarska-Kozakiewicz, Dariusz J Smoliński

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
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  4. Core spliceosomal Sm proteins as constituents of cytoplasmic mRNPs in plants.The Plant journal : for cell and molecular biology · 2020
    Article
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  6. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Agnieszka Kołowerzo-LubnauDepartment of Cell Biology, Faculty of Biology and Environment Protection, Nicolaus Copernicus University, Toruń, Poland; Centre For Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Toruń, Poland.
Janusz NiedojadłoDepartment of Cell Biology, Faculty of Biology and Environment Protection, Nicolaus Copernicus University, Toruń, Poland.
Michał Świdziński
Elżbieta Bednarska-KozakiewiczDepartment of Cell Biology, Faculty of Biology and Environment Protection, Nicolaus Copernicus University, Toruń, Poland.
Dariusz J SmolińskiDepartment of Cell Biology, Faculty of Biology and Environment Protection, Nicolaus Copernicus University, Toruń, Poland; Centre For Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Toruń, Poland.
Nicolaus Copernicus University · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Manuscript provides insights into the biology of long-lived plants, different from Arabidopsis, tomato or grass species that are widely studied. In the European larch the diplotene stage lasts approximately 5 months and it is possible to divide it into several substages and to observe each of them in details. The diplotene stage is a period of intensive microsporocyte growth associated with the synthesis and accumulation of different RNA and proteins. Larch microsporocytes display changes in chromatin morphology during this stage, alternating between 4 short stages of chromatin condensation (contraction) and 5 longer diffusion (relaxation) stages. The occurrence of a diplotene diffusion stage has been observed in many plant species. Interestingly, they have also been observed during spermiogenesis and oogenesis in animals. The aim of this study was to examine whether chromatin relaxation during the diplotene is accompanied by the synthesis and maturation of mRNA. The results reveal a correlation between the diffusion and chromatin decondensation, transcriptional activity. We also found decreasing amount of poly(A) mRNA synthesis in the consecutive diffusion stages. During the early diffusion stages, mRNA is intensively synthesized. In the nuclei large amounts of RNA polymerase II, and high levels of snRNPs were observed. In the late diffusion stages, the synthesized mRNA is not directly subjected to translation but it is stored in the nucleus, and later transported to the cytoplasm and translated. In the last diffusion stage, the level of poly(A) RNA is low, but that of splicing factors is still high. It appears that the mRNA synthesized in early stages is used during the diplotene stage and is not transmitted to dyad and tetrads. In contrast, splicing factors accumulate and are most likely transmitted to the dyad and tetrads, where they are used after the resumption of intense transcription. Similar meiotic process were observed during oogenesis in animals. This indicates the existence of an evolutionarily conserved mechanism of chromatin-based regulation of gene expression during meiotic prophase I.

Indexed as

Meiotic Prophase ITranscription, GeneticChromatinLarixRNA, MessengerRNA Polymerase IIRNA, Small NuclearChromatinRNA, MessengerRNA Polymerase IIRNA, Small Nuclear

Identifiers

PMID25671569
PMCPMC4324999
OpenAlexW2090804281

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.