Evidence map›Paper›PMID 25671092›Full record

ArticleGigaScience2014

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.

Cai Li, Yong Zhang, Jianwen Li, Lesheng Kong, Haofu Hu, Hailin Pan, Luohao Xu, Yuan Deng, Qiye Li, Lijun Jin and 31 more

Open access · goldAbstract read
In one paragraph

Article in GigaScience, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. An Overview of the Penguin Visual System.Vision (Basel, Switzerland) · 2023
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Linking 19th century European settlement to the disruption of a seabird's natural population dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 12 institutions in 8 countries.

Cai LiChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China ; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.
Yong ZhangChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Jianwen LiChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Lesheng KongMRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, South Parks Road, Oxford, OX1 3QX UK.
Haofu HuChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Hailin PanChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Luohao XuChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Yuan DengChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Qiye LiChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China ; Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.
Lijun JinChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Hao YuChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Yan ChenChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Binghang LiuChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Linfeng YangChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Shiping LiuChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Yan ZhangChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Yongshan LangChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Jinquan XiaChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Weiming HeChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Qiong ShiChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
Sankar SubramanianEnvironmental Futures Centre, Griffith University, Nathan, QLD 4111 Australia.
Craig D MillarAllan Wilson Centre for Molecular Ecology and Evolution, School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand.
Stephen MeaderMRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, South Parks Road, Oxford, OX1 3QX UK.
Chris M RandsMRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, South Parks Road, Oxford, OX1 3QX UK.
Matthew K FujitaMRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, South Parks Road, Oxford, OX1 3QX UK ; Department of Biology, University of Texas at Arlington, Arlington, TX 76019 USA.
Matthew J GreenwoldDepartment of Biological Sciences, University of South Carolina, Columbia, SC USA.
Todd A CastoeDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO 80045 USA ; Biology Department, University of Texas Arlington, Arlington, TX 76016 USA.
David D PollockDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO 80045 USA.
Wanjun GuResearch Centre of Learning Sciences, Southeast University, Nanjing, 210096 China.
Kiwoong NamDepartment of Evolutionary Biology, Uppsala University, Norbyvagen 18D, SE-752 36 Uppsala, Sweden ; Bioinformatics Research Centre (BiRC), Aarhus University, C.F.Møllers Allé 8, 8000 Aarhus C, Denmark.
Hans EllegrenDepartment of Evolutionary Biology, Uppsala University, Norbyvagen 18D, SE-752 36 Uppsala, Sweden.
Simon Yw HoSchool of Biological Sciences, University of Sydney, Sydney, NSW 2006 Australia.
David W BurtDepartment of Genomics and Genetics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus Midlothian, Edinburgh, EH25 9RG UK.
Chris P PontingMRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, South Parks Road, Oxford, OX1 3QX UK.
Erich D JarvisDepartment of Neurobiology, Howard Hughes Medical Institute, Duke University Medical Center, Durham, NC27710 USA.
M Thomas P GilbertCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark ; Trace and Environmental DNA Laboratory, Department of Environment and Agriculture, Curtin University, Perth, WA 6102 Australia.
Huanming YangChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China ; Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, 21589 Saudi Arabia.
Jian WangChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China.
David M LambertEnvironmental Futures Centre, Griffith University, Nathan, QLD 4111 Australia.
Jun WangChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China ; Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah, 21589 Saudi Arabia ; Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark ; Macau University of Science and Technology, Avenida Wai long, Taipa, Macau, 999078 China ; Department of Medicine, University of Hong Kong, Hong Kong, Hong Kong.
Guojie ZhangChina National GeneBank, BGI-Shenzhen, Shenzhen, 518083 China ; Centre for Social Evolution, Department of Biology, University of Copenhagen, Universitetsparken 15, Copenhagen, DK-2100 Denmark.
China National GeneBank · CNGenomics England · GBGeocenter Denmark · DKUppsala University · SEAllan Wilson Centre · NZBioInnovation Institute · DKBiolog (United States) · USGenomics (United Kingdom) · GBHoward Hughes Medical Institute · USPediatrics and Genetics · USUniversity of South Carolina · USUniversity of Sydney · AU

Funding

Modeling evolution of functional context in proteinsR01GM083127 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI POLLOCK, DAVID D · 2009 to 2019
$2.7M
Genome-wide mutation models to decipher functionR01GM097251 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI POLLOCK, DAVID D · 2012 to 2015
$1.2M
European Research Council 249869Medical Research Council MC_U137761446Medical Research Council MC_UU_12021/1NIGMS NIH HHS R01 GM083127NIGMS NIH HHS R01 GM097251
6 · The paper itself

Abstract

backgroundPenguins are flightless aquatic birds widely distributed in the Southern Hemisphere. The distinctive morphological and physiological features of penguins allow them to live an aquatic life, and some of them have successfully adapted to the hostile environments in Antarctica. To study the phylogenetic and population history of penguins and the molecular basis of their adaptations to Antarctica, we sequenced the genomes of the two Antarctic dwelling penguin species, the Adélie penguin [Pygoscelis adeliae] and emperor penguin [Aptenodytes forsteri].

resultsPhylogenetic dating suggests that early penguins arose ~60 million years ago, coinciding with a period of global warming. Analysis of effective population sizes reveals that the two penguin species experienced population expansions from ~1 million years ago to ~100 thousand years ago, but responded differently to the climatic cooling of the last glacial period. Comparative genomic analyses with other available avian genomes identified molecular changes in genes related to epidermal structure, phototransduction, lipid metabolism, and forelimb morphology.

conclusionsOur sequencing and initial analyses of the first two penguin genomes provide insights into the timing of penguin origin, fluctuations in effective population sizes of the two penguin species over the past 10 million years, and the potential associations between these biological patterns and global climate change. The molecular changes compared with other avian genomes reflect both shared and diverse adaptations of the two penguin species to the Antarctic environment.

Indexed as

AdaptationAntarcticaAvian genomicsEvolutionPenguins

Identifiers

PMID25671092
PMCPMC4322438
OpenAlexW2143599392

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.