Evidence map›Paper›PMID 25671076›Full record

ArticleSkeletal muscle2015

The role of Sox6 in zebrafish muscle fiber type specification.

Harriet E Jackson, Yosuke Ono, Xingang Wang, Stone Elworthy, Vincent T Cunliffe, Philip W Ingham

Open access · goldAbstract read
In one paragraph

Article in Skeletal muscle, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 2 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 2 syntheses or guidelines pooled it, 47 citations in OpenAlex.

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  19. Inhibition of lncRNA MAAT Controls Multiple Types of Muscle Atrophy by cis- and trans-Regulatory Actions.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Harriet E JacksonASTAR Institute of Molecular and Cell Biology, Proteos, 61 Biopolis Drive, Singapore, 138673 Republic of Singapore ; Bateson Centre, University of Sheffield, Western Bank, Sheffield, S10 2TN UK.
Yosuke OnoASTAR Institute of Molecular and Cell Biology, Proteos, 61 Biopolis Drive, Singapore, 138673 Republic of Singapore.
Xingang WangASTAR Institute of Molecular and Cell Biology, Proteos, 61 Biopolis Drive, Singapore, 138673 Republic of Singapore.
Stone ElworthyBateson Centre, University of Sheffield, Western Bank, Sheffield, S10 2TN UK.
Vincent T CunliffeBateson Centre, University of Sheffield, Western Bank, Sheffield, S10 2TN UK.
Philip W InghamASTAR Institute of Molecular and Cell Biology, Proteos, 61 Biopolis Drive, Singapore, 138673 Republic of Singapore ; Lee Kong Chian School of Medicine, Nanyang Technological University, Proteos, 61 Biopolis Drive, Singapore, 138673 Republic of Singapore ; Department of Medicine, Imperial College, South Kensington Campus, London, SW7 2AZ UK.
Agency for Science, Technology and Research · SGUniversity of Sheffield · GBInstitute of Molecular and Cell Biology · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe transcription factor Sox6 has been implicated in regulating muscle fiber type-specific gene expression in mammals. In zebrafish, loss of function of the transcription factor Prdm1a results in a slow to fast-twitch fiber type transformation presaged by ectopic expression of sox6 in slow-twitch progenitors. Morpholino-mediated Sox6 knockdown can suppress this transformation but causes ectopic expression of only one of three slow-twitch specific genes assayed. Here, we use gain and loss of function analysis to analyse further the role of Sox6 in zebrafish muscle fiber type specification.

methodsThe GAL4 binary misexpression system was used to express Sox6 ectopically in zebrafish embryos. Cis-regulatory elements were characterized using transgenic fish. Zinc finger nuclease mediated targeted mutagenesis was used to analyse the effects of loss of Sox6 function in embryonic, larval and adult zebrafish. Zebrafish transgenic for the GCaMP3 Calcium reporter were used to assay Ca2+ transients in wild-type and mutant muscle fibres.

resultsEctopic Sox6 expression is sufficient to downregulate slow-twitch specific gene expression in zebrafish embryos. Cis-regulatory elements upstream of the slow myosin heavy chain 1 (smyhc1) and slow troponin c (tnnc1b) genes contain putative Sox6 binding sites required for repression of the former but not the latter. Embryos homozygous for sox6 null alleles expressed tnnc1b throughout the fast-twitch muscle whereas other slow-specific muscle genes, including smyhc1, were expressed ectopically in only a subset of fast-twitch fibers. Ca2+ transients in sox6 mutant fast-twitch fibers were intermediate in their speed and amplitude between those of wild-type slow- and fast-twitch fibers. sox6 homozygotes survived to adulthood and exhibited continued misexpression of tnnc1b as well as smaller slow-twitch fibers. They also exhibited a striking curvature of the spine.

conclusionsThe Sox6 transcription factor is a key regulator of fast-twitch muscle fiber differentiation in the zebrafish, a role similar to that ascribed to its murine ortholog.

Indexed as

fiber typemusclemyosinSox6spinal curvaturetroponinzebrafish

Identifiers

PMID25671076
PMCPMC4323260
OpenAlexW1989862163

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.