Evidence map›Paper›PMID 25670855›Full record

ArticleThe Journal of biological chemistry2015

Rad25 protein is targeted for degradation by the Ubc4-Ufd4 pathway.

Xin Bao, Jill L Johnson, Hai Rao

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 95% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. The role of ubiquitin-conjugating enzyme in the process of spermatogenesis.Reproductive biology and endocrinology : RB&E · 2024
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Xin BaoFrom the Department of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229 and baox@livemail.uthscsa.edu.
Jill L Johnsonthe Department of Biological Sciences, University of Idaho, Moscow, Idaho 83844.
Hai RaoFrom the Department of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, Texas 78229 and raoh@uthscsa.edu.
The University of Texas Health Science Center at San Antonio · US

Funding

Targeting ubiquitylated proteins to the proteasomeR01GM078085 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI RAO, HAI · 2007 to 2011
$1.3M
NIGMS NIH HHS GM 078085
6 · The paper itself

Abstract

Proteasome-mediated proteolysis provides dynamic spatial and temporal modulation of protein concentration in response to various intrinsic and extrinsic challenges. To gain a better understanding of the role of the proteasome in DNA repair, we systematically monitored the stability of 26 proteins involved in nucleotide excision repair (NER) under normal growth conditions. Among six NER factors found to be regulated by the proteasome, we further delineated the specific pathway involved in the degradation of Rad25, a subunit of TFIIH. We demonstrate that Rad25 turnover requires the ubiquitin-conjugating enzyme Ubc4 and the ubiquitin ligase Ufd4. Interestingly, the deletion of UFD4 specifically suppresses the rad25 mutant defective in transcription. Our results reveal a novel function of the Ufd4 pathway and another tie between the proteasome and NER regulators.

Indexed as

DNA HelicasesProteasome Endopeptidase ComplexProteolysisSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factor TFIIHUbiquitinationUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesDNA HelicasesProteasome Endopeptidase ComplexSaccharomyces cerevisiae ProteinsSSL2 protein, S cerevisiaeTranscription Factor TFIIHUbc4 protein, S cerevisiaeUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesUfd4 protein, S cerevisiaeDNA RepairE3 Ubiquitin LigaseProteasomeProtein DegradationUbiquitinUbiquitylation (Ubiquitination)

Identifiers

PMID25670855
PMCPMC4375509
OpenAlexW2063087105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.