Evidence map›Paper›PMID 25670677›Full record

ArticleNucleic acids research2015

DNA recognition by Escherichia coli CbpA protein requires a conserved arginine-minor-groove interaction.

Kiran Chintakayala, Laura E Sellars, Shivani S Singh, Rajesh Shahapure, Ilja Westerlaken, Anne S Meyer, Remus T Dame, David C Grainger

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. TheMicroorganisms · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Kiran ChintakayalaInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Laura E SellarsInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Shivani S SinghInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.
Rajesh ShahapureLeiden Institute of Chemistry, Gorlaeus Laboratories, Leiden University, Leiden, The Netherlands.
Ilja WesterlakenDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands.
Anne S MeyerDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands.
Remus T DameLeiden Institute of Chemistry, Gorlaeus Laboratories, Leiden University, Leiden, The Netherlands.
David C GraingerInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK d.grainger@bham.ac.uk.
University of Birmingham · GBDelft University of Technology · NLLeiden University · NL

Funding

Biotechnology and Biological Sciences Research Council BB/H010289/1Wellcome Trust WT085092MA
6 · The paper itself

Abstract

Curved DNA binding protein A (CbpA) is a co-chaperone and nucleoid associated DNA binding protein conserved in most γ-proteobacteria. Best studied in Escherichia coli, CbpA accumulates to >2500 copies per cell during periods of starvation and forms aggregates with DNA. However, the molecular basis for DNA binding is unknown; CbpA lacks motifs found in other bacterial DNA binding proteins. Here, we have used a combination of genetics and biochemistry to elucidate the mechanism of DNA recognition by CbpA. We show that CbpA interacts with the DNA minor groove. This interaction requires a highly conserved arginine side chain. Substitution of this residue, R116, with alanine, specifically disrupts DNA binding by CbpA, and its homologues from other bacteria, whilst not affecting other CbpA activities. The intracellular distribution of CbpA alters dramatically when DNA binding is negated. Hence, we provide a direct link between DNA binding and the behaviour of CbpA in cells.

Indexed as

Amino Acid SubstitutionArginineCarrier ProteinsDNADNA-Binding ProteinsEscherichia coli ProteinsModels, MolecularNucleic Acid ConformationProtein BindingProtein MultimerizationArginineCarrier ProteinsCbpM protein, E coliDNADNA-Binding ProteinsEscherichia coli Proteins

Identifiers

PMID25670677
PMCPMC4344490
OpenAlexW2100758361

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.