Evidence map›Paper›PMID 25668726›Full record

ArticlePloS one2015

Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation.

Navjyoti Chakraborty, Priyanka Sharma, Kostya Kanyuka, Ravi R Pathak, Devapriya Choudhury, Richard A Hooley, Nandula Raghuram

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Life, death and resurrection of plant GPCRs.Plant molecular biology · 2023
    Review
  4. Review
  5. Characterization of ZmCOLD1, novel GPCR-Type G Protein genes involved in cold stress fromPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Navjyoti ChakrabortyUniversity School of Biotechnology, G.G.S. Indraprastha University, Sector 16 C, Dwarka, New Delhi, 110078, India.
Priyanka SharmaUniversity School of Biotechnology, G.G.S. Indraprastha University, Sector 16 C, Dwarka, New Delhi, 110078, India.
Kostya KanyukaDept. of Plant Biology and Crop Science, Rothamsted Research, West Common, Harpenden, Hertfordshire, AL5 2JQ, United Kingdom.
Ravi R PathakUniversity School of Biotechnology, G.G.S. Indraprastha University, Sector 16 C, Dwarka, New Delhi, 110078, India.
Devapriya ChoudhurySchool of Biotechnology, Jawaharlal Nehru University, New Delhi, India.
Richard A HooleyDept. of Biology and Biochemistry, University of Bath, Claverton Down, Bath, BA2 7AY, United Kingdom.
Nandula RaghuramUniversity School of Biotechnology, G.G.S. Indraprastha University, Sector 16 C, Dwarka, New Delhi, 110078, India.
Guru Gobind Singh Indraprastha University · INJawaharlal Nehru University · INRothamsted Research · GBUniversity of Bath · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The controversy over the existence or the need for G-protein coupled receptors (GPCRs) in plant G-protein signalling has overshadowed a more fundamental quest for the role of AtGCR1, the most studied and often considered the best candidate for GPCR in plants. Our whole transcriptome microarray analysis of the GCR1-knock-out mutant (gcr1-5) in Arabidopsis thaliana revealed 350 differentially expressed genes spanning all chromosomes. Many of them were hitherto unknown in the context of GCR1 or G-protein signalling, such as in phosphate starvation, storage compound and fatty acid biosynthesis, cell fate, etc. We also found some GCR1-responsive genes/processes that are reported to be regulated by heterotrimeric G-proteins, such as biotic and abiotic stress, hormone response and secondary metabolism. Thus, GCR1 could have G-protein-mediated as well as independent roles and regardless of whether it works as a GPCR, further analysis of the organism-wide role of GCR1 has a significance of its own.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression ProfilingGene Expression Regulation, PlantHormonesMutationPhosphatesReceptors, G-Protein-CoupledSecondary MetabolismSignal TransductionStress, PhysiologicalArabidopsis ProteinsGCR1 protein, ArabidopsisHormonesPhosphatesReceptors, G-Protein-Coupled

Identifiers

PMID25668726
PMCPMC4357605
OpenAlexW2108978853

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.