Evidence map›Paper›PMID 25668159›Full record

ArticleThe ISME journal2015

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix.

Olga Pantos, Pim Bongaerts, Paul G Dennis, Gene W Tyson, Ove Hoegh-Guldberg

Abstract read
In one paragraph

Article in The ISME journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
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  4. Article
  5. Influence of reef habitat on coral microbial associations.Environmental microbiology reports · 2024
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  18. Review
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Olga PantosSchool of Biological Sciences, University of Queensland, St Lucia, Queensland, Australia.
Pim Bongaerts1] School of Biological Sciences, University of Queensland, St Lucia, Queensland, Australia [2] Global Change Institute, University of Queensland, St Lucia, Queensland, Australia.
Paul G DennisSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland, Australia.
Gene W Tyson1] Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, St Lucia, Queensland, Australia [2] Advanced Water Management Centre, University of Queensland, St Lucia, Queensland, Australia.
Ove Hoegh-Guldberg1] School of Biological Sciences, University of Queensland, St Lucia, Queensland, Australia [2] Global Change Institute, University of Queensland, St Lucia, Queensland, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reef-building corals form complex relationships with a range of microorganisms including bacteria, archaea, fungi and the unicellular microalgae of the genus Symbiodinium, which together form the coral holobiont. These symbionts are known to have both beneficial and deleterious effects on their coral host, but little is known about what the governing factors of these relationships are, or the interactions that exist between the different members of the holobiont and their environment. Here we used 16S ribosomal RNA gene amplicon sequencing to investigate how archaeal and bacterial communities associated with the widespread scleractinian coral Seriatopora hystrix are influenced by extrinsic (reef habitat and geographic location) and intrinsic (host genotype and Symbiodinium subclade) factors. Bacteria dominate the microbiome of S. hystrix, with members of the Alphaproteobacteria, Gammaproteobacteria and Bacteriodetes being the most predominant in all samples. The richness and evenness of these communities varied between reef habitats, but there was no significant difference between distinct coral host lineages or corals hosting distinct Symbiodinium subclades. The coral microbiomes correlated to reef habitat (depth) and geographic location, with a negative correlation between Alpha- and Gammaproteobacteria, driven by the key members of both groups (Rhodobacteraceae and Hahellaceae, respectively), which showed significant differences between location and depth. This study suggests that the control of microbial communities associated with the scleractinian coral S. hystrix is driven primarily by external environmental conditions rather than by those directly associated with the coral holobiont.

Indexed as

Coral ReefsAnimalsAnthozoaArchaeaAustraliaGammaproteobacteriaGenotypeMicrobiotaRhodobacteraceaeRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID25668159
PMCPMC4542040

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.