ArticleEvolutionary applications2015
Population genomic analyses of early-phase Atlantic Salmon (Salmo salar) domestication/captive breeding.
Article in Evolutionary applications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Genetic Diversity and Runs of Homozygosity in Three Masu Salmon (Biomolecules · 2026Article
- Consequences of domestication in eastern oyster: Insights from whole genomic analyses.Evolutionary applications · 2024Article
- Genome-wide detection of positive and balancing signatures of selection shared by four domesticated rainbow trout populations (Oncorhynchus mykiss).Genetics, selection, evolution : GSE · 2024Article
- Genomic evidence for domestication selection in three hatchery populations of Chinook salmon,Evolutionary applications · 2024Article
- Whole-genome resequencing reveals recent signatures of selection in five populations of largemouth bass (Zoological research · 2023Article
- Atlantic salmon (Conservation physiology · 2023Article
- Detecting Local Adaptation between North and South European Atlantic Salmon Populations.Biology · 2022Article
- Strong Parallel Differential Gene Expression Induced by Hatchery Rearing Weakly Associated with Methylation Signals in Adult Coho Salmon (O. kisutch).Genome biology and evolution · 2022Article
- Genomic selection signatures in farmedEvolutionary applications · 2022Article
- Domestication of farmed fishFrontiers in endocrinology · 2022Review
- Genomic signatures of artificial selection in fecundity of Pacific white shrimp,Frontiers in genetics · 2022Article
- Detection of selection signatures in farmed coho salmon (Oncorhynchus kisutch) using dense genome-wide information.Scientific reports · 2021Article
- Farm Animals Are Long Away from Natural Behavior: Open Questions and Operative Consequences on Animal Welfare.Animals : an open access journal from MDPI · 2021Article
- Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication.Epigenetics · 2020Article
- Changed Patterns of Genomic Variation Following Recent Domestication: Selection Sweeps in Farmed Atlantic Salmon.Frontiers in genetics · 2020Article
- DNA Methylation Changes in the Sperm of Captive-Reared Fish: A Route to Epigenetic Introgression in Wild Populations.Molecular biology and evolution · 2019Article
- Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres.Frontiers in genetics · 2019Article
- Comparing genomic signatures of domestication in two Atlantic salmon (Evolutionary applications · 2019Article
- Whole genome SNP-associated signatures of local adaptation in honeybees of the Iberian Peninsula.Scientific reports · 2018Article
- Nature versus nurture? Consequences of short captivity in early stages.Ecology and evolution · 2018Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Domestication can have adverse genetic consequences, which may reduce the fitness of individuals once released back into the wild. Many wild Atlantic salmon (Salmo salarL.) populations are threatened by anthropogenic influences, and they are supplemented with captively bred fish. The Atlantic salmon is also widely used in selective breeding programs to increase the mean trait values for desired phenotypic traits. We analyzed a genomewide set of SNPs in three domesticated Atlantic salmon strains and their wild conspecifics to identify loci underlying domestication. The genetic differentiation between domesticated strains and wild populations was low (F ST < 0.03), and domesticated strains harbored similar levels of genetic diversity compared to their wild conspecifics. Only a few loci showed footprints of selection, and these loci were located in different linkage groups among the different wild population/hatchery strain comparisons. Simulated scenarios indicated that differentiation in quantitative trait loci exceeded that in neutral markers during the early phases of divergence only when the difference in the phenotypic optimum between populations was large. This study indicates that detecting selection using standard approaches in the early phases of domestication might be challenging unless selection is strong and the traits under selection show simple inheritance patterns.
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