Evidence map›Paper›PMID 25666609›Full record

ArticleThe Journal of biological chemistry2015

A globin domain in a neuronal transmembrane receptor of Caenorhabditis elegans and Ascaris suum: molecular modeling and functional properties.

Lesley Tilleman, Francesca Germani, Sasha De Henau, Signe Helbo, Filip Desmet, Herald Berghmans, Sabine Van Doorslaer, David Hoogewijs, Liliane Schoofs, Bart P Braeckman and 3 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Structural modeling of a novel membrane-bound globin-coupled sensor inComputational and structural biotechnology journal · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lesley TillemanFrom the Departments of Biomedical Sciences and.
Francesca GermaniFrom the Departments of Biomedical Sciences and.
Sasha De Henauthe Department of Biology, Ghent University, 9000 Ghent, Belgium.
Signe Helbothe Department of Bioscience, Aarhus University, 8000 Aarhus, Denmark.
Filip DesmetPhysics, University of Antwerp, 2610 Antwerp, Belgium.
Herald BerghmansFrom the Departments of Biomedical Sciences and.
Sabine Van DoorslaerPhysics, University of Antwerp, 2610 Antwerp, Belgium.
David Hoogewijsthe Institute of Physiology and Zürich Center for Integrative Human Physiology, University of Zürich, 8006 Zürich, Switzerland, Institute of Physiology, University of Duisburg-Essen, D-45147 Essen, Germany, and.
Liliane Schoofsthe Functional Genomics and Proteomics Group, KU Leuven, 3000 Leuven, Belgium.
Bart P Braeckmanthe Department of Biology, Ghent University, 9000 Ghent, Belgium.
Luc MoensFrom the Departments of Biomedical Sciences and.
Angela Fagothe Department of Bioscience, Aarhus University, 8000 Aarhus, Denmark.
Sylvia DewildeFrom the Departments of Biomedical Sciences and sylvia.dewilde@uantwerpen.be.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the structural and biochemical characterization of GLB-33, a putative neuropeptide receptor that is exclusively expressed in the nervous system of the nematode Caenorhabditis elegans. This unique chimeric protein is composed of a 7-transmembrane domain (7TM), GLB-33 7TM, typical of a G-protein-coupled receptor, and of a globin domain (GD), GLB-33 GD. Comprehensive sequence similarity searches in the genome of the parasitic nematode, Ascaris suum, revealed a chimeric protein that is similar to a Phe-Met-Arg-Phe-amide neuropeptide receptor. The three-dimensional structures of the separate domains of both species and of the full-length proteins were modeled. The 7TM domains of both proteins appeared very similar, but the globin domain of the A. suum receptor surprisingly seemed to lack several helices, suggesting a novel truncated globin fold. The globin domain of C. elegans GLB-33, however, was very similar to a genuine myoglobin-type molecule. Spectroscopic analysis of the recombinant GLB-33 GD showed that the heme is pentacoordinate when ferrous and in the hydroxide-ligated form when ferric, even at neutral pH. Flash-photolysis experiments showed overall fast biphasic CO rebinding kinetics. In its ferrous deoxy form, GLB-33 GD is capable of reversibly binding O2 with a very high affinity and of reducing nitrite to nitric oxide faster than other globins. Collectively, these properties suggest that the globin domain of GLB-33 may serve as a highly sensitive oxygen sensor and/or as a nitrite reductase. Both properties are potentially able to modulate the neuropeptide sensitivity of the neuronal transmembrane receptor.

Indexed as

Amino Acid SequenceAnimalsAscaris suumCaenorhabditis elegansCaenorhabditis elegans ProteinsGene ExpressionGlobinsHemeHydrogen-Ion ConcentrationIronModels, MolecularMolecular Sequence DataMyoglobinNitrite ReductasesOxidation-ReductionOxygenCaenorhabditis elegans ProteinsGlobinsHemeIronMyoglobinNitrite ReductasesOxygenReceptors, NeuropeptideRecombinant ProteinsElectron Paramagnetic Resonance (EPR)HemoglobinKineticsOxygen BindingRedox Signaling

Identifiers

PMID25666609
PMCPMC4400345

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.