Evidence map›Paper›PMID 25666140›Full record

ArticleJournal of bacteriology2015

Analysis of the σE regulon in Crohn's disease-associated Escherichia coli revealed involvement of the waaWVL operon in biofilm formation.

Benoit Chassaing, Estelle Garénaux, Jessica Carriere, Nathalie Rolhion, Yann Guérardel, Nicolas Barnich, Richard Bonnet, Arlette Darfeuille-Michaud

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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  7. From germ theory to germ therapy.The Kaohsiung journal of medical sciences · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Benoit ChassaingClermont Université, UMR 1071 Inserm, Université Auvergne, Clermont-Ferrand, France INRA USC 2018, Clermont-Ferrand, France chassaingbenoit@yahoo.fr richard.bonnet@udamail.fr.
Estelle GarénauxClermont Université, UMR 1071 Inserm, Université Auvergne, Clermont-Ferrand, France INRA USC 2018, Clermont-Ferrand, France.
Jessica CarriereClermont Université, UMR 1071 Inserm, Université Auvergne, Clermont-Ferrand, France INRA USC 2018, Clermont-Ferrand, France.
Nathalie RolhionClermont Université, UMR 1071 Inserm, Université Auvergne, Clermont-Ferrand, France INRA USC 2018, Clermont-Ferrand, France.
Yann GuérardelUniversité de Lille 1, Unité de Glycobiologie Structurale et Fonctionnelle, Villeneuve d'Ascq, France CNRS, UMR 8576, Villeneuve d'Ascq, France.
Nicolas BarnichClermont Université, UMR 1071 Inserm, Université Auvergne, Clermont-Ferrand, France INRA USC 2018, Clermont-Ferrand, France.
Richard BonnetClermont Université, UMR 1071 Inserm, Université Auvergne, Clermont-Ferrand, France INRA USC 2018, Clermont-Ferrand, France Centre Hospitalier Universitaire, Clermont-Ferrand, France chassaingbenoit@yahoo.fr richard.bonnet@udamail.fr.
Arlette Darfeuille-MichaudClermont Université, UMR 1071 Inserm, Université Auvergne, Clermont-Ferrand, France INRA USC 2018, Clermont-Ferrand, France Centre Hospitalier Universitaire, Clermont-Ferrand, France.
Inserm · FRUniversité Clermont Auvergne · FRUnité de Glycobiologie Structurale et Fonctionnelle · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledIleal lesions of patients with Crohn's disease are colonized by adherent-invasive Escherichia coli (AIEC), which is able to adhere to and to invade intestinal epithelial cells (IEC), to replicate within macrophages, and to form biofilms on the surface of the intestinal mucosa. Previous analyses indicated the involvement of the σ(E) pathway in AIEC-IEC interaction, as well as in biofilm formation, with σ(E) pathway inhibition leading to an impaired ability of AIEC to colonize the intestinal mucosa and to form biofilms. The aim of this study was to characterize the σ(E) regulon of AIEC strain LF82 in order to identify members involved in AIEC phenotypes. Using comparative in silico analysis of the σ(E) regulon, we identified the waaWVL operon as a new member of the σ(E) regulon in reference AIEC strain LF82. We determined that the waaWVL operon is involved in AIEC lipopolysaccharide structure and composition, and the waaWVL operon was found to be essential for AIEC strains to produce biofilm and to colonize the intestinal mucosa. IMPORTANCE: An increased prevalence of adherent-invasive Escherichia coli (AIEC) bacteria was previously observed in the intestinal mucosa of Crohn's disease (CD) patients, and clinical observations revealed bacterial biofilms associated with the mucosa of CD patients. Here, analysis of the σ(E) regulon in AIEC and commensal E. coli identified 12 genes controlled by σ(E) only in AIEC. Among them, WaaWVL factors were found to play an essential role in biofilm formation and mucosal colonization by AIEC. In addition to identifying molecular tools that revealed a pathogenic population of E. coli colonizing the mucosa of CD patients, these results indicate that targeting the waaWVL operon could be a potent therapeutic strategy to interfere with the ability of AIEC to form biofilms and to colonize the gut mucosa.

Indexed as

BiofilmsBacterial AdhesionCrohn DiseaseEscherichia coliEscherichia coli ProteinsHumansMultigene FamilyOperonRegulonSigma FactorEscherichia coli ProteinsSigma Factorsporulation-specific sigma factors

Identifiers

PMID25666140
PMCPMC4372749
OpenAlexW2122055450

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.