Evidence map›Paper›PMID 25665164›Full record

ArticlePLoS biology2015

A novel TGFβ modulator that uncouples R-Smad/I-Smad-mediated negative feedback from R-Smad/ligand-driven positive feedback.

Wenchao Gu, Rui Monteiro, Jie Zuo, Filipa Costa Simões, Andrea Martella, Charlotte Andrieu-Soler, Frank Grosveld, Tatjana Sauka-Spengler, Roger Patient

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Natural Autoantibodies in Chronic Pulmonary Diseases.International journal of molecular sciences · 2020
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Wenchao GuWeatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom.
Rui MonteiroWeatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom; BHF Centre of Research Excellence, Oxford, United Kingdom.
Jie ZuoWeatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom.
Filipa Costa SimõesDepartment of Physiology, Anatomy and Genetics, University of Oxford, Oxford, United Kingdom.
Andrea MartellaDepartment of Cell Biology, Erasmus Medical Centre, Rotterdam, The Netherlands.
Charlotte Andrieu-SolerINSERM U872, Université René Descartes Sorbonne Paris Cité, Team 17, Centre de Recherche des Cordeliers, Paris, France.
Frank GrosveldDepartment of Cell Biology, Erasmus Medical Centre, Rotterdam, The Netherlands.
Tatjana Sauka-SpenglerWeatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom.
Roger PatientWeatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford, United Kingdom; BHF Centre of Research Excellence, Oxford, United Kingdom.
John Radcliffe Hospital · GBErasmus University Rotterdam · NLUniversity of Oxford · GBCentre de Recherche des Cordeliers · FR

Funding

British Heart Foundation FS/13/50/30436British Heart Foundation PG/09/082/28020Medical Research Council G0902418Medical Research Council MC_U137981013Medical Research Council MC_UU_12009/8
6 · The paper itself

Abstract

As some of the most widely utilised intercellular signalling molecules, transforming growth factor β (TGFβ) superfamily members play critical roles in normal development and become disrupted in human disease. Establishing appropriate levels of TGFβ signalling involves positive and negative feedback, which are coupled and driven by the same signal transduction components (R-Smad transcription factor complexes), but whether and how the regulation of the two can be distinguished are unknown. Genome-wide comparison of published ChIP-seq datasets suggests that LIM domain binding proteins (Ldbs) co-localise with R-Smads at a substantial subset of R-Smad target genes including the locus of inhibitory Smad7 (I-Smad7), which mediates negative feedback for TGFβ signalling. We present evidence suggesting that zebrafish Ldb2a binds and directly activates the I-Smad7 gene, whereas it binds and represses the ligand gene, Squint (Sqt), which drives positive feedback. Thus, the fine tuning of TGFβ signalling derives from positive and negative control by Ldb2a. Expression of ldb2a is itself activated by TGFβ signals, suggesting potential feed-forward loops that might delay the negative input of Ldb2a to the positive feedback, as well as the positive input of Ldb2a to the negative feedback. In this way, precise gene expression control by Ldb2a enables an initial build-up of signalling via a fully active positive feedback in the absence of buffering by the negative feedback. In Ldb2a-deficient zebrafish embryos, homeostasis of TGFβ signalling is perturbed and signalling is stably enhanced, giving rise to excess mesoderm and endoderm, an effect that can be rescued by reducing signalling by the TGFβ family members, Nodal and BMP. Thus, Ldb2a is critical to the homeostatic control of TGFβ signalling and thereby embryonic patterning.

Indexed as

Feedback, PhysiologicalAnimalsBase SequenceBody PatterningEmbryo, NonmammalianEndodermGene Expression Regulation, DevelopmentalHumansLIM Domain ProteinsMembrane ProteinsMesodermMiceMicroinjectionsMolecular Sequence DataMorpholinosNodal Signaling Ligandsldb2a protein, zebrafishLIM Domain ProteinsMembrane ProteinsMorpholinosndr1 protein, zebrafishNodal Signaling Ligandsnomo protein, zebrafishSmad7 Proteinsmad7 protein, zebrafishTransforming Growth Factor betaZebrafish Proteins

Identifiers

PMID25665164
PMCPMC4321984
OpenAlexW2040078270

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.