Evidence map›Paper›PMID 25662977›Full record

ArticleApplied and environmental microbiology2015

Metatranscriptomic evidence for co-occurring top-down and bottom-up controls on toxic cyanobacterial communities.

Morgan M Steffen, B Shafer Belisle, Sue B Watson, Gregory L Boyer, Richard A Bourbonniere, Steven W Wilhelm

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 57 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Morgan M SteffenDepartment of Microbiology, The University of Tennessee, Knoxville, Tennessee, USA.
B Shafer BelisleDepartment of Microbiology, The University of Tennessee, Knoxville, Tennessee, USA.
Sue B WatsonWater Science and Technology Directorate, Environment Canada, Burlington, ON, Canada.
Gregory L BoyerDepartment of Chemistry, State University of New York, Environmental Science and Forestry, Syracuse, New York, USA.
Richard A BourbonniereWater Science and Technology Directorate, Environment Canada, Burlington, ON, Canada.
Steven W WilhelmDepartment of Microbiology, The University of Tennessee, Knoxville, Tennessee, USA wilhelm@utk.edu.
University of Tennessee at Knoxville · USEnvironment and Climate Change Canada · CAState University of New York · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Little is known about the molecular and physiological function of co-occurring microbes within freshwater cyanobacterial harmful algal blooms (cHABs). To address this, community metatranscriptomes collected from the western basin of Lake Erie during August 2012 were examined. Using sequence data, we tested the hypothesis that the activity of the microbial community members is independent of community structure. Predicted metabolic and physiological functional profiles from spatially distinct metatranscriptomes were determined to be ≥90% similar between sites. Targeted analysis of Microcystis aeruginosa, the historical causative agent of cyanobacterial harmful algal blooms over the past ∼20 years, as well as analysis of Planktothrix agardhii and Anabaena cylindrica, revealed ongoing transcription of genes involved in microcystin toxin synthesis as well as the acquisition of both nitrogen and phosphorus, nutrients often implicated as independent bottom-up drivers of eutrophication in aquatic systems. Transcription of genes involved in carbon dioxide (CO2) concentration and metabolism also provided support for the alternate hypothesis that high-pH conditions and dense algal biomass result in CO2-limiting conditions that further favor cyanobacterial dominance. Additionally, the presence of Microcystis-specific cyanophage sequences provided preliminary evidence of possible top-down virus-mediated control of cHAB populations. Overall, these data provide insight into the complex series of constraints associated with Microcystis blooms that dominate the western basin of Lake Erie during summer months, demonstrating that multiple environmental factors work to shape the microbial community.

Indexed as

BiotaBacteriophagesCyanobacteriaEutrophicationFresh WaterGene Expression ProfilingLakesMetagenomicsMolecular Sequence DataSequence Analysis, DNAUnited States

Identifiers

PMID25662977
PMCPMC4393433
OpenAlexW2049959280

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.