Evidence map›Paper›PMID 25662973›Full record

ArticleApplied and environmental microbiology2015

Mechanisms involved in Fe(III) respiration by the hyperthermophilic archaeon Ferroglobus placidus.

Jessica A Smith, Muktak Aklujkar, Carla Risso, Ching Leang, Ludovic Giloteaux, Dawn E Holmes

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. The extreme halophilic archaeonJournal of bacteriology · 2026
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  6. An Archaea-specificeLife · 2022
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  14. Article
  15. Genomic Insights Into Energy Metabolism ofFrontiers in microbiology · 2018
    Article
  16. Article
  17. Frontiers in microbiology · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jessica A SmithDepartment of Microbiology, University of Massachusetts, Amherst, Massachusetts, USA.
Muktak AklujkarDepartment of Biological Sciences, Towson University, Towson, Maryland, USA.
Carla RissoDepartment of Microbiology, University of Massachusetts, Amherst, Massachusetts, USA.
Ching LeangDepartment of Microbiology, University of Massachusetts, Amherst, Massachusetts, USA.
Ludovic GiloteauxDepartment of Microbiology, University of Massachusetts, Amherst, Massachusetts, USA.
Dawn E HolmesDepartment of Physical and Biological Sciences, Western New England University, Springfield, Massachusetts, USA dholmes@wne.edu.
University of Massachusetts Amherst · USTowson University · USWestern New England University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hyperthermophilic archaeon Ferroglobus placidus can utilize a wide variety of electron donors, including hydrocarbons and aromatic compounds, with Fe(III) serving as an electron acceptor. In Fe(III)-reducing bacteria that have been studied to date, this process is mediated by c-type cytochromes and type IV pili. However, there currently is little information available about how this process is accomplished in archaea. In silico analysis of the F. placidus genome revealed the presence of 30 genes coding for putative c-type cytochrome proteins (more than any other archaeon that has been sequenced to date), five of which contained 10 or more heme-binding motifs. When cell extracts were analyzed by SDS-PAGE followed by heme staining, multiple bands corresponding to c-type cytochromes were detected. Different protein expression patterns were observed in F. placidus cells grown on soluble and insoluble iron forms. In order to explore this result further, transcriptomic studies were performed. Eight genes corresponding to multiheme c-type cytochromes were upregulated when F. placidus was grown with insoluble Fe(III) oxide compared to soluble Fe(III) citrate as an electron acceptor. Numerous archaella (archaeal flagella) also were observed on Fe(III)-grown cells, and genes coding for two type IV pilin-like domain proteins were differentially expressed in Fe(III) oxide-grown cells. This study provides insight into the mechanisms for dissimilatory Fe(III) respiration by hyperthermophilic archaea.

Indexed as

Gene Expression RegulationGenome, ArchaealArchaeal ProteinsArchaeoglobalesCytochromes cFerric CompoundsMolecular Sequence DataOxidation-ReductionProteomeSequence Analysis, DNATranscriptomeArchaeal ProteinsCytochromes cFerric CompoundsProteome

Identifiers

PMID25662973
PMCPMC4375341
OpenAlexW2149096603

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.