Evidence map›Paper›PMID 25662971›Full record

ArticleApplied and environmental microbiology2015

Phenotypic and genotypic description of Sedimenticola selenatireducens strain CUZ, a marine (per)chlorate-respiring gammaproteobacterium, and its close relative the chlorate-respiring Sedimenticola strain NSS.

Charlotte I Carlström, Dana E Loutey, Ouwei Wang, Anna Engelbrektson, Iain Clark, Lauren N Lucas, Pranav Y Somasekhar, John D Coates

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Isolation and identification of chlorate-reducingMicrobiology (Reading, England) · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. High-quality draft genome sequence ofStandards in genomic sciences · 2016
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Charlotte I CarlströmDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Dana E LouteyDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Ouwei WangDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Anna EngelbrektsonDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Iain ClarkDepartment of Civil and Environmental Engineering, University of California, Berkeley, California, USA.
Lauren N LucasDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Pranav Y SomasekharDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
John D CoatesDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA jdcoates@berkeley.edu.
University of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two (per)chlorate-reducing bacteria, strains CUZ and NSS, were isolated from marine sediments in Berkeley and San Diego, CA, respectively. Strain CUZ respired both perchlorate and chlorate [collectively designated (per)chlorate], while strain NSS respired only chlorate. Phylogenetic analysis classified both strains as close relatives of the gammaproteobacterium Sedimenticola selenatireducens. Transmission electron microscopy (TEM) and scanning electron microscopy (SEM) preparations showed the presence of rod-shaped, motile cells containing one polar flagellum. Optimum growth for strain CUZ was observed at 25 to 30 °C, pH 7, and 4% NaCl, while strain NSS grew optimally at 37 to 42 °C, pH 7.5 to 8, and 1.5 to 2.5% NaCl. Both strains oxidized hydrogen, sulfide, various organic acids, and aromatics, such as benzoate and phenylacetate, as electron donors coupled to oxygen, nitrate, and (per)chlorate or chlorate as electron acceptors. The draft genome of strain CUZ carried the requisite (per)chlorate reduction island (PRI) for (per)chlorate respiration, while that of strain NSS carried the composite chlorate reduction transposon responsible for chlorate metabolism. The PRI of strain CUZ encoded a perchlorate reductase (Pcr), which reduced both perchlorate and chlorate, while the genome of strain NSS included a gene for a distinct chlorate reductase (Clr) that reduced only chlorate. When both (per)chlorate and nitrate were present, (per)chlorate was preferentially utilized if the inoculum was pregrown on (per)chlorate. Historically, (per)chlorate-reducing bacteria (PRB) and chlorate-reducing bacteria (CRB) have been isolated primarily from freshwater, mesophilic environments. This study describes the isolation and characterization of two highly related marine halophiles, one a PRB and the other a CRB, and thus broadens the known phylogenetic and physiological diversity of these unusual metabolisms.

Indexed as

CaliforniaChloratesDNA, BacterialGammaproteobacteriaGenotypeGeologic SedimentsMicroscopy, Electron, ScanningMicroscopy, Electron, TransmissionMolecular Sequence DataOxidation-ReductionPerchloratesPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNASpecies SpecificityWater Pollutants, ChemicalChloratesDNA, BacterialPerchloratesRNA, Ribosomal, 16SWater Pollutants, Chemical

Identifiers

PMID25662971
PMCPMC4375318
OpenAlexW2009488206

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.