Evidence map›Paper›PMID 25662215›Full record

ArticleNucleic acids research2015

Transfer activation of SXT/R391 integrative and conjugative elements: unraveling the SetCD regulon.

Dominic Poulin-Laprade, Dominick Matteau, Pierre-Étienne Jacques, Sébastien Rodrigue, Vincent Burrus

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Interaction of the SXT/R391 element ICEMicrobiology spectrum · 2025
    Article
  5. Review
  6. Article
  7. Review
  8. Article
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  13. Review
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  15. Article
  16. CroSMolecular microbiology · 2021
    Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Dominic Poulin-LapradeLaboratory of Bacterial Molecular Genetics, Département de biologie, Université de Sherbrooke, Sherbrooke, QC, J1K 2R1, Canada.
Dominick MatteauLaboratory of Microbial Systems and Synthetic Biology, Département de biologie, Université de Sherbrooke, Sherbrooke, QC, J1K 2R1, Canada.
Pierre-Étienne JacquesLaboratory of Bioinformatics and Genomics, Département de biologie, Université de Sherbrooke, Sherbrooke, QC, J1K 2R1, Canada.
Sébastien RodrigueLaboratory of Microbial Systems and Synthetic Biology, Département de biologie, Université de Sherbrooke, Sherbrooke, QC, J1K 2R1, Canada Sebastien.Rodrigue@USherbrooke.ca.
Vincent BurrusLaboratory of Bacterial Molecular Genetics, Département de biologie, Université de Sherbrooke, Sherbrooke, QC, J1K 2R1, Canada Vincent.Burrus@USherbrooke.ca.
Université de Sherbrooke · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Integrative and conjugative elements (ICEs) of the SXT/R391 family have been recognized as key drivers of antibiotic resistance dissemination in the seventh-pandemic lineage of Vibrio cholerae. SXT/R391 ICEs propagate by conjugation and integrate site-specifically into the chromosome of a wide range of environmental and clinical Gammaproteobacteria. SXT/R391 ICEs bear setC and setD, two conserved genes coding for a transcriptional activator complex that is essential for activation of conjugative transfer. We used chromatin immunoprecipitation coupled with exonuclease digestion (ChIP-exo) and RNA sequencing (RNA-seq) to characterize the SetCD regulon of three representative members of the SXT/R391 family. We also identified the DNA sequences bound by SetCD in MGIVflInd1, a mobilizable genomic island phylogenetically unrelated to SXT/R391 ICEs that hijacks the conjugative machinery of these ICEs to drive its own transfer. SetCD was found to bind a 19-bp sequence that is consistently located near the promoter -35 element of SetCD-activated genes, a position typical of class II transcriptional activators. Furthermore, we refined our understanding of the regulation of excision from and integration into the chromosome for SXT/R391 ICEs and demonstrated that de novo expression of SetCD is crucial to allow integration of the incoming ICE DNA into a naive host following conjugative transfer.

Indexed as

Conjugation, GeneticGene Expression Regulation, BacterialRegulonBacterial ProteinsDNA, BacterialGenomic IslandsMutationNucleotide MotifsOperator Regions, GeneticPromoter Regions, GeneticTrans-ActivatorsTranscriptional ActivationBacterial ProteinsDNA, BacterialTrans-Activators

Identifiers

PMID25662215
PMCPMC4344509
OpenAlexW2164126847

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.