Evidence map›Paper›PMID 25662162›Full record

ArticleScientific reports2015

Enhanced targeted integration mediated by translocated I-SceI during the Agrobacterium mediated transformation of yeast.

Martijn Rolloos, Paul J J Hooykaas, Bert J van der Zaal

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Functional dissection ofProceedings of the National Academy of Sciences of the United States of America · 2026
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  12. Constitutive hyperproduction of sorbicillinoids inBiotechnology for biofuels · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Martijn RolloosDepartment of Molecular and Developmental Genetics, Institute of Biology Leiden, Leiden, Sylviusweg 72, 2333 BE, The Netherlands.
Paul J J HooykaasDepartment of Molecular and Developmental Genetics, Institute of Biology Leiden, Leiden, Sylviusweg 72, 2333 BE, The Netherlands.
Bert J van der ZaalDepartment of Molecular and Developmental Genetics, Institute of Biology Leiden, Leiden, Sylviusweg 72, 2333 BE, The Netherlands.
Leiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium mediated transformation (AMT) has been embraced by biotechnologists as the technology of choice to introduce or alter genetic traits of plants. However, in plants it is virtually impossible to predetermine the integration site of the transferred T-strand unless one is able to generate a double stranded break (DSB) in the DNA at the site of interest. In this study, we used the model organism Saccharomyces cerevisiae to investigate whether the Agrobacterium mediated translocation of site-specific endonucleases via the type IV secretion system (T4SS), concomitantly with T-DNA transfer is possible and whether this can improve the gene targeting efficiency. In addition to that, the effect of different chromatin states on targeted integration, was investigated. It was found that Agrobacterium mediated translocation of the homing endonuclease I-SceI has a positive effect on the integration of T-DNA via the homologous repair (HR) pathway. Furthermore, we obtained evidence that nucleosome removal has a positive effect on I-SceI facilitated T-DNA integration by HR. Reversely; inducing nucleosome formation at the site of integration removes the positive effect of translocated I-SceI on T-DNA integration.

Indexed as

Transformation, GeneticAgrobacteriumDeoxyribonucleases, Type II Site-SpecificSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDeoxyribonucleases, Type II Site-SpecificSaccharomyces cerevisiae ProteinsSCEI protein, S cerevisiae

Identifiers

PMID25662162
PMCPMC4648448
OpenAlexW2090455708

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.