Evidence map›Paper›PMID 25659774›Full record

ArticleScientific reports2015

A preliminary exploration on DNA methylation of transgene across generations in transgenic rats.

Qiling Li, Wei Xu, Ye Cui, Li Ma, Jendai Richards, Wenzhi Li, Yamin Ma, Guoxing Fu, Tameka Bythwood, Yueling Wang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Profiling genome-wide DNA methylation.Epigenetics & chromatin · 2016
    Review
  6. References for Haplotype Imputation in the Big Data Era.Molecular biology (Los Angeles, Calif.) · 2015
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Qiling Li1] Department of Obstetrics and Gynecology, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China [2] Cardiovascular Research Institute, Morehouse School of Medicine, Atlanta, Georgia, USA.
Wei XuCardiovascular Research Institute, Morehouse School of Medicine, Atlanta, Georgia, USA.
Ye CuiDepartment of Mathematics and Statistics, Georgia State University, Atlanta, Georgia, USA.
Li MaCardiovascular Research Institute, Morehouse School of Medicine, Atlanta, Georgia, USA.
Jendai RichardsCardiovascular Research Institute, Morehouse School of Medicine, Atlanta, Georgia, USA.
Wenzhi LiCardiovascular Research Institute, Morehouse School of Medicine, Atlanta, Georgia, USA.
Yamin MaCardiovascular Research Institute, Morehouse School of Medicine, Atlanta, Georgia, USA.
Guoxing FuCardiovascular Research Institute, Morehouse School of Medicine, Atlanta, Georgia, USA.
Tameka BythwoodCardiovascular Research Institute, Morehouse School of Medicine, Atlanta, Georgia, USA.
Yueling WangDepartment of Obstetrics and Gynecology, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China.
Xu LiDepartment of Obstetrics and Gynecology, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China.
Qing Song1] Department of Obstetrics and Gynecology, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China [2] Cardiovascular Research Institute, Morehouse School of Medicine, Atlanta, Georgia, USA.
Morehouse School of Medicine · USFirst Affiliated Hospital of Xi'an Jiaotong University · CNGeorgia State University · US

Funding

Morehouse School of Medicine Center of Excellence Research Endowment ProgramS21MD000101 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI MONTGOMERY-RICE, VALERIE C. · 2001 to 2015
$74.3M
TRANSCRIPTION FACTORS AND PROSTATE CANCERG12RR003034 · NCRR · MOREHOUSE SCHOOL OF MEDICINE · PI ZHAO, XUEYING · 1986 to 2011
$32.4M
Minority Health-GRID Network: A Genomics Resource for Health Disparity ResearchRC4MD005964 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI DAVIS, ROBERT LOWELL, NICKERSON, DEBORAH A · 2010 to 2010
$13.3M
Determining the Phased Genome SequencesR21HG006173 · NHGRI · MOREHOUSE SCHOOL OF MEDICINE · PI SONG, QING · 2012 to 2013
$389k
Establish a Transgenic Model of Human C-Reactive Protein Over-expression in RatsSC2HL095098 · NHLBI · MOREHOUSE SCHOOL OF MEDICINE · PI WANG, QINGWEI · 2008 to 2010
$315k
NCRR NIH HHS G12 RR003034NCRR NIH HHS RR003034NHGRI NIH HHS HG006173NHGRI NIH HHS R21 HG006173NHLBI NIH HHS HL095098NHLBI NIH HHS SC2 HL095098NIMHD NIH HHS MD005964NIMHD NIH HHS RC4 MD005964NIMHD NIH HHS S21 MD000101
6 · The paper itself

Abstract

Epigenetic heritability is an important issue in the field of genetics and also in the development of many human diseases. In this study, we created a transgenic rat model and investigated the transgenerational methylation patterns in these animals. The transgene DNA fragment was unmethylated before it was injected into the pronucleus, so it is a good model to study the inheritance of DNA methylation patterns. We performed bisulfite sequencing on 23 CpG dinucleotides on the transgene across three generations in two tissues. We observed that the transgene was heavily methylated in the liver (87.53%) from the founder generation, whereas its methylation rate was much lower in the kidney (70.47%). Spearman correlation analysis showed that there was a strong correlation on the methylation status between different generations in the same tissue, which was observed in both liver and kidney, and among all individuals in this pedigree. This study provided some evidence that DNA methylation patterns acquired in the founder animal can be passed to the offspring.

Indexed as

DNA MethylationTransgenesAnimalsCpG IslandsEpigenomicsKidneyLiverRatsRats, Transgenic

Identifiers

PMID25659774
PMCPMC4321119
OpenAlexW2039404828

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.