Evidence map›Paper›PMID 25659529›Full record

ArticlePlasmid2015

An rpsL-based allelic exchange vector for Staphylococcus aureus.

John Chen, Geeta Ram, Pauline Yoong, José R Penadés, Bo Shopsin, Richard P Novick

Open access · greenAbstract read
In one paragraph

Article in Plasmid, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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  8. Genetic insights intoPathogens and global health
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

John ChenSkirball Institute Program in Molecular Pathogenesis, Departments of Microbiology and Medicine, New York University Medical Center, New York, NY 10016, USA. Electronic address: john.chen@med.nyu.edu.
Geeta RamSkirball Institute Program in Molecular Pathogenesis, Departments of Microbiology and Medicine, New York University Medical Center, New York, NY 10016, USA.
Pauline YoongDepartment of Microbiology, New York University School of Medicine, New York, NY 10016, USA.
José R PenadésInstitute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.
Bo ShopsinDepartments of Medicine and Microbiology, New York University School of Medicine, New York, NY 10016, USA.
Richard P NovickSkirball Institute Program in Molecular Pathogenesis, Departments of Microbiology and Medicine, New York University Medical Center, New York, NY 10016, USA. Electronic address: richard.novick@med.nyu.edu.
New York University · USUniversity of Glasgow · GB

Funding

Molecular Biology of TSST-1 and other superantigen toxinsR01AI022159 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI NOVICK, RICHARD P. · 1985 to 2014
$2.6M
Role of precipitous virulence in invasiveness of community-acquired methicillin-rR01AI103268 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SHOPSIN, BO, TORRES, VICTOR J. · 2013 to 2017
$2.1M
NIAID NIH HHS R01 AI022159NIAID NIH HHS R01AI022159NIAID NIH HHS R01 AI103268
6 · The paper itself

Abstract

Staphylococcus aureus is one of the most successful bacterial pathogens, harboring a vast repertoire of virulence factors in its arsenal. As such, the genetic manipulation of S. aureus chromosomal DNA is an important tool for the study of genes involved in virulence and survival in the host. Previously reported allelic exchange vectors for S. aureus are shuttle vectors that can be propagated in Escherichia coli, so that standard genetic manipulations can be carried out. Most of the vectors currently in use carry the temperature-sensitive replicon (pE194ts) that was originally developed for use in Bacillus subtilis. Here we show that in S. aureus, the thermosensitivity of a pE194ts vector is incomplete at standard non-permissive temperatures (42 °C), and replication of the plasmid is impaired but not abolished. We report rpsL-based counterselection vectors, with an improved temperature-sensitive replicon (pT181 repC3) that is completely blocked for replication in S. aureus at non-permissive and standard growth temperature (37 °C). We also describe a set of temperature-sensitive vectors that can be cured at standard growth temperature. These vectors provide highly effective tools for rapidly generating allelic replacement mutations and curing expression plasmids, and expand the genetic tool set available for the study of S. aureus.

Indexed as

Genetic VectorsAllelesBacterial ProteinsCloning, MolecularDNA, BacterialEscherichia coli ProteinsGenetic EngineeringHot TemperaturePlasmidsRepliconRibosomal Protein S9Staphylococcus aureusBacterial ProteinsDNA, BacterialEscherichia coli ProteinsRibosomal Protein S9RpsI protein, E coliAllelic exchangeCounterselectionrpsLStaphylococcus aureusStreptomycinTemperature-sensitive

Identifiers

PMID25659529
PMCPMC4628793
OpenAlexW2067485712

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.