Evidence map›Paper›PMID 25659432›Full record

ArticleThe Journal of biological chemistry2015

Dpb11 protein helps control assembly of the Cdc45·Mcm2-7·GINS replication fork helicase.

Nalini Dhingra, Irina Bruck, Skye Smith, Boting Ning, Daniel L Kaplan

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  5. Review
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  8. Review
  9. Mechanisms and regulation of DNA replication initiation in eukaryotes.Critical reviews in biochemistry and molecular biology · 2017
    Review
  10. Article
  11. Review
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  16. Conserved mechanism for coordinating replication fork helicase assembly with phosphorylation of the helicase.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Nalini DhingraFrom the Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee 37235 and.
Irina Bruckthe Department of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, Florida 32306-4300.
Skye Smiththe Department of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, Florida 32306-4300.
Boting NingFrom the Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee 37235 and.
Daniel L Kaplanthe Department of Biomedical Sciences, Florida State University College of Medicine, Tallahassee, Florida 32306-4300 Daniel.Kaplan@med.fsu.edu.
Florida State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dpb11 is required for the initiation of DNA replication in budding yeast. Dpb11 binds to S-phase cyclin-dependent kinase-phosphorylated Sld2 and Sld3 to form a ternary complex during S phase. The replication fork helicase in eukaryotes is composed of Cdc45, Mcm2-7, and GINS. We show here, using purified proteins from budding yeast, that Dpb11 alone binds to Mcm2-7 and that Dpb11 also competes with GINS for binding to Mcm2-7. Furthermore, Dpb11 binds directly to single-stranded DNA (ssDNA), and ssDNA inhibits the Dpb11 interaction with Mcm2-7. We also found that Dpb11 can recruit Cdc45 to Mcm2-7. We identified a mutant of the BRCT4 motif of Dpb11 that remains bound to Mcm2-7 in the presence of ssDNA (dpb11-m1,m2,m3,m5), and this mutant exhibits a DNA replication defect when expressed in budding yeast cells. Expression of this mutant results in increased interaction between Dpb11 and Mcm2-7 during S phase, impaired GINS interaction with Mcm2-7 during S phase, and decreased replication protein A (RPA) interaction with origin DNA during S phase. We propose a model in which Dpb11 first recruits Cdc45 to Mcm2-7. Dpb11, although bound to Cdc45·Mcm2-7, can block the interaction between GINS and Mcm2-7. Upon extrusion of ssDNA from the central channel of Mcm2-7, Dpb11 dissociates from Mcm2-7, and Dpb11 binds to ssDNA, thereby allowing GINS to bind to Cdc45·Mcm2-7. Finally, we propose that Dpb11 functions with Sld2 and Sld3 to help control the assembly of the replication fork helicase.

Indexed as

DNA ReplicationBase SequenceCell Cycle ProteinsCloning, MolecularDNA-Binding ProteinsDNA, FungalDNA HelicasesDNA, Single-StrandedMinichromosome Maintenance ProteinsMolecular Sequence DataNuclear ProteinsProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCDC45 protein, S cerevisiaeCell Cycle ProteinsDNA-Binding ProteinsDNA, FungalDNA HelicasesDNA, Single-StrandedDPB11 protein, S cerevisiaeMinichromosome Maintenance ProteinsNuclear ProteinsSaccharomyces cerevisiae ProteinsCell CycleCyclin-dependent Kinase (CDK)DNADNA HelicaseDNA Replication

Identifiers

PMID25659432
PMCPMC4367264
OpenAlexW1989274274

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.