Evidence map›Paper›PMID 25659431›Full record

ArticleThe Journal of biological chemistry2015

Mycobacterium tuberculosis response regulators, DevR and NarL, interact in vivo and co-regulate gene expression during aerobic nitrate metabolism.

Vandana Malhotra, Ruchi Agrawal, Tammi R Duncan, Deepak K Saini, Josephine E Clark-Curtiss

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 49 citations in OpenAlex.

  1. Cefpiramide RestrictsACS medicinal chemistry letters · 2026
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  9. Frontiers in cellular and infection microbiology · 2023
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  10. The Effects of Paroxetine on Benthic Microbial Food Web and Nitrogen Transformation in River Sediments.International journal of environmental research and public health · 2022
    Article
  11. Hit Compounds and Associated Targets in IntracellularMolecules (Basel, Switzerland) · 2022
    Article
  12. Review
  13. Review
  14. Review
  15. Veterinary world · 2020
    Review
  16. Potential therapeutic approaches for a sleeping pathogen: tuberculosis a case for bioinorganic chemistry.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Review
  17. Review
  18. Article
  19. Communications biology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Vandana MalhotraFrom the Center for Infectious Diseases and Vaccinology, Biodesign Institute, and vmal71@gmail.com.
Ruchi Agrawalthe Department of Molecular Reproduction, Development, and Genetics, Indian Institute of Science, Bangalore 560012, India.
Tammi R DuncanFrom the Center for Infectious Diseases and Vaccinology, Biodesign Institute, and the School of Life Sciences, Arizona State University, Tempe, Arizona 85287 and.
Deepak K Sainithe Department of Molecular Reproduction, Development, and Genetics, Indian Institute of Science, Bangalore 560012, India deepak@mrdg.iisc.ernet.in.
Josephine E Clark-CurtissFrom the Center for Infectious Diseases and Vaccinology, Biodesign Institute, and the School of Life Sciences, Arizona State University, Tempe, Arizona 85287 and.
Arizona State University · USIndian Institute of Science Bangalore · IN

Funding

GENE EXPRESSION IN MYCOBACTERIUM TUBERCULOSISR01AI046428 · NIAID · WASHINGTON UNIVERSITY · PI CLARK-CURTISS, JOSEPHINE E · 2000 to 2009
$2.6M
Arizona State University PREP for Biomedical ResearchR25GM071798 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI HOGUE, BRENDA G. · 2004 to 2014
$2.4M
NIAID NIH HHS AI46428.NIAID NIH HHS R01 AI046428NIGMS NIH HHS GM071798NIGMS NIH HHS R25 GM071798
6 · The paper itself

Abstract

Mycobacterium tuberculosis genes Rv0844c/Rv0845 encoding the NarL response regulator and NarS histidine kinase are hypothesized to constitute a two-component system involved in the regulation of nitrate metabolism. However, there is no experimental evidence to support this. In this study, we established M. tuberculosis NarL/NarS as a functional two-component system and identified His(241) and Asp(61) as conserved phosphorylation sites in NarS and NarL, respectively. Transcriptional profiling between M. tuberculosis H37Rv and a ΔnarL mutant strain during exponential growth in broth cultures with or without nitrate defined an ∼30-gene NarL regulon that exhibited significant overlap with DevR-regulated genes, thereby implicating a role for the DevR response regulator in the regulation of nitrate metabolism. Notably, expression analysis of a subset of genes common to NarL and DevR regulons in M. tuberculosis ΔdevR, ΔdevSΔdosT, and ΔnarL mutant strains revealed that in response to nitrite produced during aerobic nitrate metabolism, the DevRS/DosT regulatory system plays a primary role that is augmented by NarL. Specifically, NarL itself was unable to bind to the narK2, acg, and Rv3130c promoters in phosphorylated or unphosphorylated form; however, its interaction with DevR∼P resulted in cooperative binding, thereby enabling co-regulation of these genes. These findings support the role of physiologically derived nitrite as a metabolic signal in mycobacteria. We propose NarL-DevR binding, possibly as a heterodimer, as a novel mechanism for co-regulation of gene expression by the DevRS/DosT and NarL/NarS regulatory systems.

Indexed as

Gene Expression Regulation, BacterialAerobiosisBacterial ProteinsGenes, BacterialKineticsMycobacterium tuberculosisNitratesNitritesPhosphorylationProtein Processing, Post-TranslationalTranscription FactorsTranscription, GeneticBacterial ProteinsNitratesNitritesTranscription FactorsBacterial Signal TransductionCoregulationDevRGene ExpressionMycobacterium tuberculosisNarLNitrogen MetabolismProtein-Protein InteractionResponse RegulatorsTwo-component System

Identifiers

PMID25659431
PMCPMC4375484
OpenAlexW1985813659

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.