Evidence map›Paper›PMID 25658941›Full record

ArticlePloS one2015

Insights into the cellular function of YhdE, a nucleotide pyrophosphatase from Escherichia coli.

Jin Jin, Ruijuan Wu, Jia Zhu, Shaoyuan Yang, Zhen Lei, Nan Wang, Vinay K Singh, Jimin Zheng, Zongchao Jia

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Analysis of essential genes inJournal of bacteriology · 2025
    Article
  2. Analysis of Essential Genes inbioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jin JinCollege of Chemistry, Beijing Normal University, Beijing, China.
Ruijuan WuCollege of Chemistry, Beijing Normal University, Beijing, China.
Jia ZhuCollege of Chemistry, Beijing Normal University, Beijing, China.
Shaoyuan YangCollege of Chemistry, Beijing Normal University, Beijing, China.
Zhen LeiCollege of Chemistry, Beijing Normal University, Beijing, China.
Nan WangCollege of Chemistry, Beijing Normal University, Beijing, China.
Vinay K SinghDepartment of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada.
Jimin ZhengCollege of Chemistry, Beijing Normal University, Beijing, China.
Zongchao JiaCollege of Chemistry, Beijing Normal University, Beijing, China; Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, Canada.
Beijing Normal University · CNQueen's University · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

YhdE, a Maf-like protein in Escherichia coli, exhibits nucleotide pyrophosphatase (PPase) activity, yet its cellular function remains unknown. Here, we characterized the PPase activity of YhdE on dTTP, UTP and TTP and determined two crystal structures of YhdE, revealing 'closed' and 'open' conformations of an adaptive active site. Our functional studies demonstrated that YhdE retards cell growth by prolonging the lag and log phases, particularly under stress conditions. Morphology studies showed that yhdE-knockout cells transformed the normal rod shape of wild-type cells to a more spherical form, and the cell wall appeared to become more flexible. In contrast, YhdE overexpression resulted in filamentous cells. This study reveals the previously unknown involvement of YhdE in cell growth inhibition under stress conditions, cell-division arrest and cell-shape maintenance, highlighting YhdE's important role in E. coli cell-cycle checkpoints.

Indexed as

Cell Cycle CheckpointsEscherichia coliEscherichia coli ProteinsGene Knockdown TechniquesPyrophosphatasesEscherichia coli Proteinsnucleotide pyrophosphatasePyrophosphatases

Identifiers

PMID25658941
PMCPMC4319933
OpenAlexW2014269470

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.